mirror of https://github.com/msberends/AMR.git
40 lines
1.9 KiB
R
40 lines
1.9 KiB
R
|
# ==================================================================== #
|
||
|
|
# TITLE #
|
||
|
|
# Antimicrobial Resistance (AMR) Analysis #
|
||
|
|
# #
|
||
|
|
# SOURCE #
|
||
|
|
# https://gitlab.com/msberends/AMR #
|
||
|
|
# #
|
||
|
|
# LICENCE #
|
||
|
|
# (c) 2019 Berends MS (m.s.berends@umcg.nl), Luz CF (c.f.luz@umcg.nl) #
|
||
|
|
# #
|
||
|
|
# This R package is free software; you can freely use and distribute #
|
||
|
|
# it for both personal and commercial purposes under the terms of the #
|
||
|
|
# GNU General Public License version 2.0 (GNU GPL-2), as published by #
|
||
|
|
# the Free Software Foundation. #
|
||
|
|
# #
|
||
|
|
# This R package was created for academic research and was publicly #
|
||
|
|
# released in the hope that it will be useful, but it comes WITHOUT #
|
||
|
|
# ANY WARRANTY OR LIABILITY. #
|
||
|
|
# Visit our website for more info: https://msberends.gitlab.io/AMR. #
|
||
|
|
# ==================================================================== #
|
||
|
|
|
||
|
|
context("ab.R")
|
||
|
|
|
||
|
|
test_that("as.atc works", {
|
||
|
|
expect_identical(class(as.atc("amox")), "atc")
|
||
|
|
expect_true(is.atc(as.atc("amox")))
|
||
|
|
expect_output(print(as.atc("amox")))
|
||
|
|
expect_output(print(data.frame(a = as.atc("amox"))))
|
||
|
|
|
||
|
|
expect_identical(class(pull(antibiotics, atc)), "atc")
|
||
|
|
|
||
|
|
expect_warning(as.atc("Z00ZZ00")) # not yet availatcle in data set
|
||
|
|
expect_warning(as.atc("UNKNOWN"))
|
||
|
|
|
||
|
|
expect_output(print(as.atc("amox")))
|
||
|
|
|
||
|
|
|
||
|
|
|
||
|
|
})
|