AMR/man/export_ncbi_biosample.Rd

% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/export_biosample.R
\name{export_ncbi_biosample}
\alias{export_ncbi_biosample}
\title{Export Data Set as NCBI BioSample Antibiogram}
\usage{
export_ncbi_biosample(
  x,
  filename = paste0("biosample_", format(Sys.time(), "\%Y-\%m-\%d-\%H\%M\%S"), ".xlsx"),
  type = "pathogen MIC",
  columns = where(is.mic),
  save_as_xlsx = TRUE
)
}
\arguments{
\item{x}{a data set}

\item{filename}{a character string specifying the file name}

\item{type}{a character string specifying the type of data set, either "pathogen MIC" or "beta-lactamase MIC", see \url{https://www.ncbi.nlm.nih.gov/biosample/docs/}}
}
\description{
Export Data Set as NCBI BioSample Antibiogram
}
\keyword{internal}