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< h1 > Split ages into age groups< / h1 >
< div class = "hidden name" > < code > age_groups.Rd< / code > < / div >
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< p > Split ages into age groups defined by the < code > split< / code > parameter. This allows for easier demographic (antimicrobial resistance) analysis.< / p >
< / div >
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< pre class = "usage" > < span class = 'fu' > age_groups< / span > (< span class = 'no' > x< / span > , < span class = 'kw' > split_at< / span > < span class = 'kw' > =< / span > < span class = 'fu' > < a href = 'https://rdrr.io/r/base/c.html' > c< / a > < / span > (< span class = 'fl' > 12< / span > , < span class = 'fl' > 25< / span > , < span class = 'fl' > 55< / span > , < span class = 'fl' > 75< / span > ), < span class = 'kw' > na.rm< / span > < span class = 'kw' > =< / span > < span class = 'fl' > FALSE< / span > )< / pre >
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< h2 class = "hasAnchor" id = "arguments" > < a class = "anchor" href = "#arguments" > < / a > Arguments< / h2 >
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< tr >
< th > x< / th >
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< td > < p > age, e.g. calculated with < code > < a href = 'age.html' > age()< / a > < / code > < / p > < / td >
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< / tr >
< tr >
< th > split_at< / th >
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< td > < p > values to split < code > x< / code > at, defaults to age groups 0-11, 12-24, 25-54, 55-74 and 75+. See Details.< / p > < / td >
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< / tr >
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< tr >
< th > na.rm< / th >
< td > < p > a logical to indicate whether missing values should be removed< / p > < / td >
< / tr >
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< p > Ordered < code > < a href = 'https://rdrr.io/r/base/factor.html' > factor< / a > < / code > < / p >
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< h2 class = "hasAnchor" id = "details" > < a class = "anchor" href = "#details" > < / a > Details< / h2 >
< p > To split ages, the input can be:< / p > < ul >
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< li > < p > A numeric vector. A vector of e.g. < code > < a href = 'https://rdrr.io/r/base/c.html' > c(10, 20)< / a > < / code > will split on 0-9, 10-19 and 20+. A value of only < code > 50< / code > will split on 0-49 and 50+.
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The default is to split on young children (0-11), youth (12-24), young adults (25-54), middle-aged adults (55-74) and elderly (75+).< / p > < / li >
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< li > < p > A character:< / p > < ul >
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< li > < p > < code > "children"< / code > or < code > "kids"< / code > , equivalent of: < code > < a href = 'https://rdrr.io/r/base/c.html' > c(0, 1, 2, 4, 6, 13, 18)< / a > < / code > . This will split on 0, 1, 2-3, 4-5, 6-12, 13-17 and 18+.< / p > < / li >
< li > < p > < code > "elderly"< / code > or < code > "seniors"< / code > , equivalent of: < code > < a href = 'https://rdrr.io/r/base/c.html' > c(65, 75, 85)< / a > < / code > . This will split on 0-64, 65-74, 75-84, 85+.< / p > < / li >
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< li > < p > < code > "fives"< / code > , equivalent of: < code > 1:20 * 5< / code > . This will split on 0-4, 5-9, 10-14, ..., 90-94, 95-99, 100+.< / p > < / li >
< li > < p > < code > "tens"< / code > , equivalent of: < code > 1:10 * 10< / code > . This will split on 0-9, 10-19, 20-29, ... 80-89, 90-99, 100+.< / p > < / li >
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< / ul > < / li >
< / ul >
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< h2 class = "hasAnchor" id = "read-more-on-our-website-" > < a class = "anchor" href = "#read-more-on-our-website-" > < / a > Read more on our website!< / h2 >
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< p > On our website < a href = 'https://msberends.gitlab.io/AMR' > https://msberends.gitlab.io/AMR< / a > you can find < a href = 'https://msberends.gitlab.io/AMR/articles/AMR.html' > a tutorial< / a > about how to conduct AMR analysis, the < a href = 'https://msberends.gitlab.io/AMR/reference' > complete documentation of all functions< / a > (which reads a lot easier than here in R) and < a href = 'https://msberends.gitlab.io/AMR/articles/WHONET.html' > an example analysis using WHONET data< / a > .< / p >
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< h2 class = "hasAnchor" id = "see-also" > < a class = "anchor" href = "#see-also" > < / a > See also< / h2 >
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< div class = 'dont-index' > < p > To determine ages, based on one or more reference dates, use the < code > < a href = 'age.html' > age()< / a > < / code > function.< / p > < / div >
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< h2 class = "hasAnchor" id = "examples" > < a class = "anchor" href = "#examples" > < / a > Examples< / h2 >
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< pre class = "examples" > < span class = 'no' > ages< / span > < span class = 'kw' > < -< / span > < span class = 'fu' > < a href = 'https://rdrr.io/r/base/c.html' > c< / a > < / span > (< span class = 'fl' > 3< / span > , < span class = 'fl' > 8< / span > , < span class = 'fl' > 16< / span > , < span class = 'fl' > 54< / span > , < span class = 'fl' > 31< / span > , < span class = 'fl' > 76< / span > , < span class = 'fl' > 101< / span > , < span class = 'fl' > 43< / span > , < span class = 'fl' > 21< / span > )
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< span class = 'co' > # split into 0-49 and 50+< / span >
< span class = 'fu' > age_groups< / span > (< span class = 'no' > ages< / span > , < span class = 'fl' > 50< / span > )
< span class = 'co' > # split into 0-19, 20-49 and 50+< / span >
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< span class = 'fu' > age_groups< / span > (< span class = 'no' > ages< / span > , < span class = 'fu' > < a href = 'https://rdrr.io/r/base/c.html' > c< / a > < / span > (< span class = 'fl' > 20< / span > , < span class = 'fl' > 50< / span > ))
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< span class = 'co' > # split into groups of ten years< / span >
< span class = 'fu' > age_groups< / span > (< span class = 'no' > ages< / span > , < span class = 'fl' > 1< / span > :< span class = 'fl' > 10< / span > * < span class = 'fl' > 10< / span > )
< span class = 'fu' > age_groups< / span > (< span class = 'no' > ages< / span > , < span class = 'kw' > split_at< / span > < span class = 'kw' > =< / span > < span class = 'st' > "tens"< / span > )
< span class = 'co' > # split into groups of five years< / span >
< span class = 'fu' > age_groups< / span > (< span class = 'no' > ages< / span > , < span class = 'fl' > 1< / span > :< span class = 'fl' > 20< / span > * < span class = 'fl' > 5< / span > )
< span class = 'fu' > age_groups< / span > (< span class = 'no' > ages< / span > , < span class = 'kw' > split_at< / span > < span class = 'kw' > =< / span > < span class = 'st' > "fives"< / span > )
< span class = 'co' > # split specifically for children< / span >
< span class = 'fu' > age_groups< / span > (< span class = 'no' > ages< / span > , < span class = 'st' > "children"< / span > )
< span class = 'co' > # same:< / span >
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< span class = 'fu' > age_groups< / span > (< span class = 'no' > ages< / span > , < span class = 'fu' > < a href = 'https://rdrr.io/r/base/c.html' > c< / a > < / span > (< span class = 'fl' > 1< / span > , < span class = 'fl' > 2< / span > , < span class = 'fl' > 4< / span > , < span class = 'fl' > 6< / span > , < span class = 'fl' > 13< / span > , < span class = 'fl' > 17< / span > ))
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< span class = 'kw' > if< / span > (< span class = 'fl' > FALSE< / span > ) {
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< span class = 'co' > # resistance of ciprofloxacine per age group< / span >
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< span class = 'fu' > < a href = 'https://rdrr.io/r/base/library.html' > library< / a > < / span > (< span class = 'no' > dplyr< / span > )
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< span class = 'no' > example_isolates< / span > < span class = 'kw' > %> %< / span >
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< span class = 'fu' > < a href = 'first_isolate.html' > filter_first_isolate< / a > < / span > () < span class = 'kw' > %> %< / span >
< span class = 'fu' > < a href = 'https://dplyr.tidyverse.org/reference/filter.html' > filter< / a > < / span > (< span class = 'no' > mo< / span > < span class = 'kw' > ==< / span > < span class = 'fu' > < a href = 'as.mo.html' > as.mo< / a > < / span > (< span class = 'st' > "E. coli"< / span > )) < span class = 'kw' > %> %< / span >
< span class = 'fu' > < a href = 'https://dplyr.tidyverse.org/reference/group_by.html' > group_by< / a > < / span > (< span class = 'kw' > age_group< / span > < span class = 'kw' > =< / span > < span class = 'fu' > age_groups< / span > (< span class = 'no' > age< / span > )) < span class = 'kw' > %> %< / span >
< span class = 'fu' > < a href = 'https://dplyr.tidyverse.org/reference/select.html' > select< / a > < / span > (< span class = 'no' > age_group< / span > , < span class = 'no' > CIP< / span > ) < span class = 'kw' > %> %< / span >
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< span class = 'fu' > < a href = 'ggplot_rsi.html' > ggplot_rsi< / a > < / span > (< span class = 'kw' > x< / span > < span class = 'kw' > =< / span > < span class = 'st' > "age_group"< / span > )
}< / pre >
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