2018-12-16 22:45:12 +01:00
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# ==================================================================== #
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# TITLE #
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# Antimicrobial Resistance (AMR) Analysis #
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# #
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2019-01-02 23:24:07 +01:00
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# SOURCE #
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# https://gitlab.com/msberends/AMR #
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2018-12-16 22:45:12 +01:00
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# #
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# LICENCE #
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2019-01-02 23:24:07 +01:00
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# (c) 2019 Berends MS (m.s.berends@umcg.nl), Luz CF (c.f.luz@umcg.nl) #
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2018-12-16 22:45:12 +01:00
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# #
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2019-01-02 23:24:07 +01:00
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# This R package is free software; you can freely use and distribute #
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# it for both personal and commercial purposes under the terms of the #
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# GNU General Public License version 2.0 (GNU GPL-2), as published by #
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# the Free Software Foundation. #
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# #
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# This R package was created for academic research and was publicly #
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# released in the hope that it will be useful, but it comes WITHOUT #
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# ANY WARRANTY OR LIABILITY. #
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2019-04-05 18:47:39 +02:00
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# Visit our website for more info: https://msberends.gitlab.io/AMR. #
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2018-12-16 22:45:12 +01:00
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# ==================================================================== #
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2018-11-19 13:00:22 +01:00
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context("read.4d.R")
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test_that("read 4D works", {
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library(dplyr)
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test1 <- data.frame(Patientnr = "ABC",
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MV = "M",
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Monsternr = "0123",
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Afnamedat = "10-11-12",
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Bepaling = "bk",
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Afd. = "ABC",
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Spec = "ABC",
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Matbijz. = "ABC",
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Mat = "ABC",
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Mocode = "esccol",
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PENI = "R",
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stringsAsFactors = FALSE)
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tf <- tempfile()
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write.table(test1, file = tf, quote = F, sep = "\t")
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2018-11-24 20:25:09 +01:00
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x <- read.4D(tf, skip = 0, info = TRUE)
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2018-11-19 13:00:22 +01:00
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unlink(tf)
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expect_equal(ncol(x), 11)
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expect_equal(class(x$date_received), "Date")
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expect_equal(class(x$mo), "mo")
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2019-09-18 15:46:09 +02:00
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expect_equal(as.character(x$mo), "B_ESCHR_COLI")
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2018-11-19 13:00:22 +01:00
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expect_equal(is.rsi(x$peni), TRUE)
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})
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