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new antibiotics
2019-05-10 16:44:59 +02:00
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<h1>Data set for RSI interpretation</h1>
<div class="hidden name"><code>rsi_translation.Rd</code></div>
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<div class="ref-description">
<p>Data set to interpret MIC and disk diffusion to RSI values. Included guidelines are CLSI (2011-2019) and EUCAST (2011-2019). Use <code><a href='as.rsi.html'>as.rsi</a></code> to transform MICs or disks measurements to RSI values.</p>
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<pre class="usage"><span class='no'>rsi_translation</span></pre>
<h2 class="hasAnchor" id="format"><a class="anchor" href="#format"></a>Format</h2>
<p>A <code><a href='https://www.rdocumentation.org/packages/base/topics/data.frame'>data.frame</a></code> with 11,559 observations and 9 variables:</p><dl class='dl-horizontal'>
<dt><code>guideline</code></dt><dd><p>Name of the guideline</p></dd>
<dt><code>mo</code></dt><dd><p>Microbial ID, see <code><a href='as.mo.html'>as.mo</a></code></p></dd>
<dt><code>ab</code></dt><dd><p>Antibiotic ID, see <code><a href='as.ab.html'>as.ab</a></code></p></dd>
<dt><code>ref_tbl</code></dt><dd><p>Info about where the guideline rule can be found</p></dd>
<dt><code>S_mic</code></dt><dd><p>Lowest MIC value that leads to "S"</p></dd>
<dt><code>R_mic</code></dt><dd><p>Highest MIC value that leads to "R"</p></dd>
<dt><code>dose_disk</code></dt><dd><p>Dose of the used disk diffusion method</p></dd>
<dt><code>S_disk</code></dt><dd><p>Lowest number of millimeters that leads to "S"</p></dd>
<dt><code>R_disk</code></dt><dd><p>Highest number of millimeters that leads to "R"</p></dd>
</dl>
<h2 class="hasAnchor" id="read-more-on-our-website-"><a class="anchor" href="#read-more-on-our-website-"></a>Read more on our website!</h2>
(v0.6.1.9044) first_isolate fix for species
2019-05-31 14:25:11 +02:00
<p>On our website <a href='https://msberends.gitlab.io/AMR'>https://msberends.gitlab.io/AMR</a> you can find <a href='https://msberends.gitlab.io/AMR/articles/AMR.html'>a tutorial</a> about how to conduct AMR analysis, the <a href='https://msberends.gitlab.io/AMR/reference'>complete documentation of all functions</a> (which reads a lot easier than here in R) and <a href='https://msberends.gitlab.io/AMR/articles/WHONET.html'>an example analysis using WHONET data</a>.</p>
new antibiotics
2019-05-10 16:44:59 +02:00
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<li><a href="#format">Format</a></li>
<li><a href="#read-more-on-our-website-">Read more on our website!</a></li>
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