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< h1 > Check availability of columns< / h1 >
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< small class = "dont-index" > Source: < a href = 'https://github.com/msberends/AMR/blob/master/R/availability.R' > < code > R/availability.R< / code > < / a > < / small >
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< div class = "hidden name" > < code > availability.Rd< / code > < / div >
< / div >
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< p > Easy check for data availability of all columns in a data set. This makes it easy to get an idea of which antimicrobial combinations can be used for calculation with e.g. < code > < a href = 'proportion.html' > susceptibility()< / a > < / code > and < code > < a href = 'proportion.html' > resistance()< / a > < / code > .< / p >
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< / div >
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< pre class = "usage" > < span class = 'fu' > availability< / span > (< span class = 'no' > tbl< / span > , < span class = 'kw' > width< / span > < span class = 'kw' > =< / span > < span class = 'kw' > NULL< / span > )< / pre >
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< h2 class = "hasAnchor" id = "arguments" > < a class = "anchor" href = "#arguments" > < / a > Arguments< / h2 >
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< colgroup > < col class = "name" / > < col class = "desc" / > < / colgroup >
< tr >
< th > tbl< / th >
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< td > < p > a < code > < a href = 'https://rdrr.io/r/base/data.frame.html' > data.frame< / a > < / code > or < code > < a href = 'https://rdrr.io/r/base/list.html' > list< / a > < / code > < / p > < / td >
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< / tr >
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< tr >
< th > width< / th >
< td > < p > number of characters to present the visual availability, defaults to filling the width of the console< / p > < / td >
< / tr >
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< / table >
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< h2 class = "hasAnchor" id = "value" > < a class = "anchor" href = "#value" > < / a > Value< / h2 >
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< p > < code > < a href = 'https://rdrr.io/r/base/data.frame.html' > data.frame< / a > < / code > with column names of < code > tbl< / code > as row names< / p >
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< h2 class = "hasAnchor" id = "details" > < a class = "anchor" href = "#details" > < / a > Details< / h2 >
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< p > The function returns a < code > < a href = 'https://rdrr.io/r/base/data.frame.html' > data.frame< / a > < / code > with columns < code > "resistant"< / code > and < code > "visual_resistance"< / code > . The values in that columns are calculated with < code > < a href = 'proportion.html' > resistance()< / a > < / code > .< / p >
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< h2 class = "hasAnchor" id = "stable-lifecycle" > < a class = "anchor" href = "#stable-lifecycle" > < / a > Stable lifecycle< / h2 >
< p > < img src = 'figures/lifecycle_stable.svg' style = margin-bottom:5px / > < br / >
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The < a href = 'lifecycle.html' > lifecycle< / a > of this function is < strong > stable< / strong > . In a stable function, major changes are unlikely. This means that the unlying code will generally evolve by adding new arguments; removing arguments or changing the meaning of existing arguments will be avoided.< / p >
< p > If the unlying code needs breaking changes, they will occur gradually. For example, a parameter will be deprecated and first continue to work, but will emit an message informing you of the change. Next, typically after at least one newly released version on CRAN, the message will be transformed to an error.< / p >
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< h2 class = "hasAnchor" id = "read-more-on-our-website-" > < a class = "anchor" href = "#read-more-on-our-website-" > < / a > Read more on our website!< / h2 >
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< p > On our website < a href = 'https://msberends.github.io/AMR' > https://msberends.github.io/AMR< / a > you can find < a href = 'https://msberends.github.io/AMR/articles/AMR.html' > a comprehensive tutorial< / a > about how to conduct AMR analysis, the < a href = 'https://msberends.github.io/AMR/reference' > complete documentation of all functions< / a > (which reads a lot easier than here in R) and < a href = 'https://msberends.github.io/AMR/articles/WHONET.html' > an example analysis using WHONET data< / a > .< / p >
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< h2 class = "hasAnchor" id = "examples" > < a class = "anchor" href = "#examples" > < / a > Examples< / h2 >
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< pre class = "examples" > < span class = 'fu' > availability< / span > (< span class = 'no' > example_isolates< / span > )
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< span class = 'kw' > if< / span > (< span class = 'fl' > FALSE< / span > ) {
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< span class = 'fu' > < a href = 'https://rdrr.io/r/base/library.html' > library< / a > < / span > (< span class = 'no' > dplyr< / span > )
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< span class = 'no' > example_isolates< / span > < span class = 'kw' > %> %< / span > < span class = 'fu' > availability< / span > ()
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< span class = 'no' > example_isolates< / span > < span class = 'kw' > %> %< / span >
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< span class = 'fu' > < a href = 'https://dplyr.tidyverse.org/reference/select_all.html' > select_if< / a > < / span > (< span class = 'no' > is.rsi< / span > ) < span class = 'kw' > %> %< / span >
< span class = 'fu' > availability< / span > ()
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< span class = 'no' > example_isolates< / span > < span class = 'kw' > %> %< / span >
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< span class = 'fu' > < a href = 'https://dplyr.tidyverse.org/reference/filter.html' > filter< / a > < / span > (< span class = 'no' > mo< / span > < span class = 'kw' > ==< / span > < span class = 'fu' > < a href = 'as.mo.html' > as.mo< / a > < / span > (< span class = 'st' > "E. coli"< / span > )) < span class = 'kw' > %> %< / span >
< span class = 'fu' > < a href = 'https://dplyr.tidyverse.org/reference/select_all.html' > select_if< / a > < / span > (< span class = 'no' > is.rsi< / span > ) < span class = 'kw' > %> %< / span >
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< span class = 'fu' > availability< / span > ()
}< / pre >
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< p > Developed by < a href = 'https://www.rug.nl/staff/m.s.berends/' > Matthijs S. Berends< / a > , < a href = 'https://www.rug.nl/staff/c.f.luz/' > Christian F. Luz< / a > , < a href = 'https://www.rug.nl/staff/a.w.friedrich/' > Alexander W. Friedrich< / a > , < a href = 'https://www.rug.nl/staff/b.sinha/' > Bhanu N. M. Sinha< / a > , < a href = 'https://www.rug.nl/staff/c.j.albers/' > Casper J. Albers< / a > , < a href = 'https://www.rug.nl/staff/c.glasner/' > Corinna Glasner< / a > .< / p >
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