AMR/man/microorganisms.umcg.Rd

% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/data.R
\docType{data}
\name{microorganisms.umcg}
\alias{microorganisms.umcg}
\title{Translation table for UMCG with ~1100 microorganisms}
\format{A data.frame with 1090 observations and 2 variables:
\describe{
  \item{\code{mocode}}{Code of microorganism according to UMCG MMB}
  \item{\code{bactid}}{Code of microorganism in \code{\link{microorganisms}}}
}}
\source{
MOLIS (LIS of Certe) - \url{https://www.certe.nl} \cr \cr GLIMS (LIS of UMCG) - \url{https://www.umcg.nl}
}
\usage{
microorganisms.umcg
}
\description{
A dataset containing all bacteria codes of UMCG MMB. These codes can be joined to data with an ID from \code{\link{microorganisms}$bactid} (using \code{\link{left_join_microorganisms}}). GLIMS codes can also be translated to valid \code{bactid}'s with \code{\link{guess_bactid}}.
}
\seealso{
\code{\link{guess_bactid}} \code{\link{microorganisms}}
}
\keyword{datasets}