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<img src="../logo.svg" class="logo" alt=""><h1>Version info of included Catalogue of Life</h1>
<small class="dont-index">Source: <a href="https://github.com/msberends/AMR/blob/HEAD/R/catalogue_of_life.R" class="external-link"><code>R/catalogue_of_life.R</code></a></small>
<div class="d-none name"><code>catalogue_of_life_version.Rd</code></div>
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<div class="ref-description section level2">
<p>This function returns information about the included data from the Catalogue of Life.</p>
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<div class="section level2">
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">catalogue_of_life_version</span><span class="op">(</span><span class="op">)</span></span></code></pre></div>
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<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>a <a href="https://rdrr.io/r/base/list.html" class="external-link">list</a>, which prints in pretty format</p>
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<h2 id="details">Details<a class="anchor" aria-label="anchor" href="#details"></a></h2>
<p>For LPSN, see <a href="microorganisms.html">microorganisms</a>.</p>
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<div class="section level2">
<h2 id="catalogue-of-life">Catalogue of Life<a class="anchor" aria-label="anchor" href="#catalogue-of-life"></a></h2>
<p><img src="figures/logo_col.png" height="40" style='margin-bottom:"5"'><br>
This package contains the complete taxonomic tree of almost all microorganisms (~71,000 species) from the authoritative and comprehensive Catalogue of Life (CoL, <a href="http://www.catalogueoflife.org" class="external-link">http://www.catalogueoflife.org</a>). The CoL is the most comprehensive and authoritative global index of species currently available. Nonetheless, we supplemented the CoL data with data from the List of Prokaryotic names with Standing in Nomenclature (LPSN, <a href="https://lpsn.dsmz.de" class="external-link">lpsn.dsmz.de</a>). This supplementation is needed until the <a href="https://github.com/CatalogueOfLife/general" class="external-link">CoL+ project</a> is finished, which we await.</p>
<p><a href="catalogue_of_life.html">Click here</a> for more information about the included taxa. Check which versions of the CoL and LPSN were included in this package with <code>catalogue_of_life_version()</code>.</p>
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<h2 id="see-also">See also<a class="anchor" aria-label="anchor" href="#see-also"></a></h2>
<div class="dont-index"><p><a href="microorganisms.html">microorganisms</a></p></div>
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<p></p><p><code>AMR</code> (for R). Developed at the <a target="_blank" href="https://www.rug.nl" class="external-link">University of Groningen</a> in collaboration with non-profit organisations<br><a target="_blank" href="https://www.certe.nl" class="external-link">Certe Medical Diagnostics and Advice Foundation</a> and <a target="_blank" href="https://www.umcg.nl" class="external-link">University Medical Center Groningen</a>.</p>
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