AMR/man/example_isolates.Rd

% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/data.R
\docType{data}
\name{example_isolates}
\alias{example_isolates}
\title{Data set with 2,000 example isolates}
\format{A \code{\link{data.frame}} with 2,000 observations and 49 variables:
\itemize{
\item \code{date}\cr date of receipt at the laboratory
\item \code{hospital_id}\cr ID of the hospital, from A to D
\item \code{ward_icu}\cr logical to determine if ward is an intensive care unit
\item \code{ward_clinical}\cr logical to determine if ward is a regular clinical ward
\item \code{ward_outpatient}\cr logical to determine if ward is an outpatient clinic
\item \code{age}\cr age of the patient
\item \code{gender}\cr gender of the patient
\item \code{patient_id}\cr ID of the patient
\item \code{mo}\cr ID of microorganism created with \code{\link[=as.mo]{as.mo()}}, see also \link{microorganisms}
\item \code{PEN:RIF}\cr 40 different antibiotics with class \code{\link{rsi}} (see \code{\link[=as.rsi]{as.rsi()}}); these column names occur in \link{antibiotics} data set and can be translated with \code{\link[=ab_name]{ab_name()}}
}}
\usage{
example_isolates
}
\description{
A data set containing 2,000 microbial isolates with their full antibiograms. The data set reflects reality and can be used to practice AMR analysis. For examples, please read \href{https://msberends.gitlab.io/AMR/articles/AMR.html}{the tutorial on our website}.
}
\section{Read more on our website!}{

On our website \url{https://msberends.gitlab.io/AMR} you can find \href{https://msberends.gitlab.io/AMR/articles/AMR.html}{a tutorial} about how to conduct AMR analysis, the \href{https://msberends.gitlab.io/AMR/reference}{complete documentation of all functions} (which reads a lot easier than here in R) and \href{https://msberends.gitlab.io/AMR/articles/WHONET.html}{an example analysis using WHONET data}.
}

\keyword{datasets}