<metaproperty="og:title"content="Data set with 2,000 blood culture isolates from septic patients — example_isolates"/>
<metaproperty="og:description"content="An anonymised data set containing 2,000 microbial blood culture isolates with their full antibiograms found in septic patients in 4 different hospitals in the Netherlands, between 2001 and 2017. This data.frame can be used to practice AMR analysis. For examples, please read the tutorial on our website."/>
<p>An anonymised data set containing 2,000 microbial blood culture isolates with their full antibiograms found in septic patients in 4 different hospitals in the Netherlands, between 2001 and 2017. This <code>data.frame</code> can be used to practice AMR analysis. For examples, please read <ahref='https://msberends.gitlab.io/AMR/articles/AMR.html'>the tutorial on our website</a>.</p>
<p>A <code><ahref='https://www.rdocumentation.org/packages/base/topics/data.frame'>data.frame</a></code> with 2,000 observations and 49 variables:</p><dlclass='dl-horizontal'>
<dt><code>date</code></dt><dd><p>date of receipt at the laboratory</p></dd>
<dt><code>hospital_id</code></dt><dd><p>ID of the hospital, from A to D</p></dd>
<dt><code>ward_icu</code></dt><dd><p>logical to determine if ward is an intensive care unit</p></dd>
<dt><code>ward_clinical</code></dt><dd><p>logical to determine if ward is a regular clinical ward</p></dd>
<dt><code>ward_outpatient</code></dt><dd><p>logical to determine if ward is an outpatient clinic</p></dd>
<dt><code>age</code></dt><dd><p>age of the patient</p></dd>
<dt><code>gender</code></dt><dd><p>gender of the patient</p></dd>
<dt><code>patient_id</code></dt><dd><p>ID of the patient, first 10 characters of an SHA hash containing irretrievable information</p></dd>
<dt><code>mo</code></dt><dd><p>ID of microorganism created with <code><ahref='as.mo.html'>as.mo</a></code>, see also <code><ahref='microorganisms.html'>microorganisms</a></code></p></dd>
<dt><code>peni:rifa</code></dt><dd><p>40 different antibiotics with class <code>rsi</code> (see <code><ahref='as.rsi.html'>as.rsi</a></code>); these column names occur in <code><ahref='antibiotics.html'>antibiotics</a></code> data set and can be translated with <code><ahref='ab_property.html'>ab_name</a></code></p></dd>
</dl>
<h2class="hasAnchor"id="read-more-on-our-website-"><aclass="anchor"href="#read-more-on-our-website-"></a>Read more on our website!</h2>
<p>On our website <ahref='https://msberends.gitlab.io/AMR'>https://msberends.gitlab.io/AMR</a> you can find <ahref='https://msberends.gitlab.io/AMR/articles/AMR.html'>a tutorial</a> about how to conduct AMR analysis, the <ahref='https://msberends.gitlab.io/AMR/reference'>complete documentation of all functions</a> (which reads a lot easier than here in R) and <ahref='https://msberends.gitlab.io/AMR/articles/WHONET.html'>an example analysis using WHONET data</a>.</p>
<li><ahref="#read-more-on-our-website-">Read more on our website!</a></li>
</ul>
</div>
</div>
<footer>
<divclass="copyright">
<p>Developed by <ahref='https://www.rug.nl/staff/m.s.berends/'>Matthijs S. Berends</a>, <ahref='https://www.rug.nl/staff/c.f.luz/'>Christian F. Luz</a>, <ahref='https://www.rug.nl/staff/a.w.friedrich/'>Alex W. Friedrich</a>, <ahref='https://www.rug.nl/staff/b.sinha/'>Bhanu N. M. Sinha</a>, <ahref='https://www.rug.nl/staff/c.j.albers/'>Casper J. Albers</a>, <ahref='https://www.rug.nl/staff/c.glasner/'>Corinna Glasner</a>.</p>
</div>
<divclass="pkgdown">
<p>Site built with <ahref="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p>
