2018-12-16 22:45:12 +01:00
|
|
|
# ==================================================================== #
|
|
|
|
|
# TITLE #
|
|
|
|
|
# Antimicrobial Resistance (AMR) Analysis #
|
|
|
|
|
# #
|
2019-01-02 23:24:07 +01:00
|
|
|
# SOURCE #
|
2020-07-08 14:48:06 +02:00
|
|
|
# https://github.com/msberends/AMR #
|
2018-12-16 22:45:12 +01:00
|
|
|
# #
|
|
|
|
|
# LICENCE #
|
2020-01-05 17:22:09 +01:00
|
|
|
# (c) 2018-2020 Berends MS, Luz CF et al. #
|
2018-12-16 22:45:12 +01:00
|
|
|
# #
|
2019-01-02 23:24:07 +01:00
|
|
|
# This R package is free software; you can freely use and distribute #
|
|
|
|
|
# it for both personal and commercial purposes under the terms of the #
|
|
|
|
|
# GNU General Public License version 2.0 (GNU GPL-2), as published by #
|
|
|
|
|
# the Free Software Foundation. #
|
|
|
|
|
# #
|
2020-01-05 17:22:09 +01:00
|
|
|
# We created this package for both routine data analysis and academic #
|
|
|
|
|
# research and it was publicly released in the hope that it will be #
|
|
|
|
|
# useful, but it comes WITHOUT ANY WARRANTY OR LIABILITY. #
|
2020-07-08 14:48:06 +02:00
|
|
|
# Visit our website for more info: https://msberends.github.io/AMR. #
|
2018-12-16 22:45:12 +01:00
|
|
|
# ==================================================================== #
|
|
|
|
|
|
2018-08-31 13:36:19 +02:00
|
|
|
context("deprecated.R")
|
|
|
|
|
|
|
|
|
|
test_that("deprecated functions work", {
|
2020-07-31 10:50:08 +02:00
|
|
|
skip_on_cran()
|
2019-11-10 12:16:56 +01:00
|
|
|
expect_equal(suppressWarnings(portion_S(example_isolates$AMX)), proportion_S(example_isolates$AMX))
|
|
|
|
|
expect_equal(suppressWarnings(portion_SI(example_isolates$AMX)), proportion_SI(example_isolates$AMX))
|
|
|
|
|
expect_equal(suppressWarnings(portion_I(example_isolates$AMX)), proportion_I(example_isolates$AMX))
|
|
|
|
|
expect_equal(suppressWarnings(portion_IR(example_isolates$AMX)), proportion_IR(example_isolates$AMX))
|
|
|
|
|
expect_equal(suppressWarnings(portion_R(example_isolates$AMX)), proportion_R(example_isolates$AMX))
|
2018-08-31 13:36:19 +02:00
|
|
|
})
|
