AMR/docs/articles/index.html

287 lines
9.5 KiB
HTML
Raw Normal View History

2018-12-23 21:26:21 +01:00
<!-- Generated by pkgdown: do not edit by hand -->
<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="utf-8">
<meta http-equiv="X-UA-Compatible" content="IE=edge">
<meta name="viewport" content="width=device-width, initial-scale=1.0">
2018-12-29 22:24:19 +01:00
<title>Articles • AMR (for R)</title>
<!-- favicons -->
<link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png">
<link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png">
<link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png" />
<link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png" />
<link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png" />
<link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png" />
2019-09-25 15:43:22 +02:00
2018-12-23 21:26:21 +01:00
<!-- jquery -->
<script src="https://cdnjs.cloudflare.com/ajax/libs/jquery/3.3.1/jquery.min.js" integrity="sha256-FgpCb/KJQlLNfOu91ta32o/NMZxltwRo8QtmkMRdAu8=" crossorigin="anonymous"></script>
<!-- Bootstrap -->
2018-12-29 22:24:19 +01:00
<link href="https://cdnjs.cloudflare.com/ajax/libs/bootswatch/3.3.7/flatly/bootstrap.min.css" rel="stylesheet" crossorigin="anonymous" />
2018-12-23 21:26:21 +01:00
2019-09-25 15:43:22 +02:00
2018-12-23 21:26:21 +01:00
<script src="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.3.7/js/bootstrap.min.js" integrity="sha256-U5ZEeKfGNOja007MMD3YBI0A3OSZOQbeG6z2f2Y0hu8=" crossorigin="anonymous"></script>
<!-- Font Awesome icons -->
2019-09-25 15:43:22 +02:00
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.7.1/css/all.min.css" integrity="sha256-nAmazAk6vS34Xqo0BSrTb+abbtFlgsFK7NKSi6o7Y78=" crossorigin="anonymous" />
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.7.1/css/v4-shims.min.css" integrity="sha256-6qHlizsOWFskGlwVOKuns+D1nB6ssZrHQrNj1wGplHc=" crossorigin="anonymous" />
2018-12-23 21:26:21 +01:00
<!-- clipboard.js -->
<script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.4/clipboard.min.js" integrity="sha256-FiZwavyI2V6+EXO1U+xzLG3IKldpiTFf3153ea9zikQ=" crossorigin="anonymous"></script>
2019-09-25 15:43:22 +02:00
<!-- headroom.js -->
<script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.9.4/headroom.min.js" integrity="sha256-DJFC1kqIhelURkuza0AvYal5RxMtpzLjFhsnVIeuk+U=" crossorigin="anonymous"></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.9.4/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script>
2018-12-23 21:26:21 +01:00
<!-- pkgdown -->
<link href="../pkgdown.css" rel="stylesheet">
<script src="../pkgdown.js"></script>
2018-12-29 22:24:19 +01:00
<!-- docsearch -->
<script src="../docsearch.js"></script>
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/docsearch.js/2.6.1/docsearch.min.css" integrity="sha256-QOSRU/ra9ActyXkIBbiIB144aDBdtvXBcNc3OTNuX/Q=" crossorigin="anonymous" />
<link href="../docsearch.css" rel="stylesheet">
<script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/jquery.mark.min.js" integrity="sha256-4HLtjeVgH0eIB3aZ9mLYF6E8oU5chNdjU6p6rrXpl9U=" crossorigin="anonymous"></script>
2018-12-23 21:26:21 +01:00
2018-12-29 22:24:19 +01:00
<link href="../extra.css" rel="stylesheet">
<script src="../extra.js"></script>
2018-12-23 21:26:21 +01:00
2019-09-25 15:43:22 +02:00
<meta property="og:title" content="Articles" />
2019-01-02 23:24:07 +01:00
<meta property="og:image" content="https://msberends.gitlab.io/AMR/logo.png" />
2018-12-29 22:24:19 +01:00
<meta name="twitter:card" content="summary" />
2018-12-23 21:26:21 +01:00
2019-09-25 15:43:22 +02:00
2018-12-23 21:26:21 +01:00
<!-- mathjax -->
<script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script>
<!--[if lt IE 9]>
<script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script>
<script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script>
<![endif]-->
2019-09-25 15:43:22 +02:00
2018-12-23 21:26:21 +01:00
</head>
<body>
<div class="container template-article-index">
<header>
<div class="navbar navbar-default navbar-fixed-top" role="navigation">
<div class="container">
<div class="navbar-header">
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar" aria-expanded="false">
<span class="sr-only">Toggle navigation</span>
<span class="icon-bar"></span>
<span class="icon-bar"></span>
<span class="icon-bar"></span>
</button>
<span class="navbar-brand">
2018-12-29 22:24:19 +01:00
<a class="navbar-link" href="../index.html">AMR (for R)</a>
2019-11-05 22:42:00 +01:00
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">0.8.0.9015</span>
2018-12-23 21:26:21 +01:00
</span>
</div>
<div id="navbar" class="navbar-collapse collapse">
<ul class="nav navbar-nav">
<li>
<a href="../index.html">
2018-12-29 22:24:19 +01:00
<span class="fa fa-home"></span>
Home
</a>
</li>
2019-01-02 23:24:07 +01:00
<li class="dropdown">
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
<span class="fa fa-question-circle"></span>
How to
2018-12-23 21:26:21 +01:00
2019-01-02 23:24:07 +01:00
<span class="caret"></span>
2018-12-23 21:26:21 +01:00
</a>
2019-01-02 23:24:07 +01:00
<ul class="dropdown-menu" role="menu">
<li>
<a href="../articles/AMR.html">
<span class="fa fa-directions"></span>
Conduct AMR analysis
</a>
</li>
<li>
2019-02-11 10:27:10 +01:00
<a href="../articles/resistance_predict.html">
2019-01-02 23:24:07 +01:00
<span class="fa fa-dice"></span>
Predict antimicrobial resistance
</a>
</li>
2019-05-23 16:58:59 +02:00
<li>
<a href="../articles/MDR.html">
<span class="fa fa-skull-crossbones"></span>
Determine multi-drug resistance (MDR)
</a>
</li>
2019-01-29 00:06:50 +01:00
<li>
<a href="../articles/WHONET.html">
<span class="fa fa-globe-americas"></span>
Work with WHONET data
</a>
</li>
2019-02-14 15:18:17 +01:00
<li>
<a href="../articles/SPSS.html">
<span class="fa fa-file-upload"></span>
Import data from SPSS/SAS/Stata
</a>
</li>
2019-01-02 23:24:07 +01:00
<li>
<a href="../articles/EUCAST.html">
<span class="fa fa-exchange-alt"></span>
Apply EUCAST rules
</a>
</li>
<li>
2019-02-11 10:27:10 +01:00
<a href="../reference/mo_property.html">
2019-01-02 23:24:07 +01:00
<span class="fa fa-bug"></span>
Get properties of a microorganism
</a>
</li>
<li>
2019-05-10 16:44:59 +02:00
<a href="../reference/ab_property.html">
2019-01-02 23:24:07 +01:00
<span class="fa fa-capsules"></span>
Get properties of an antibiotic
</a>
</li>
2019-01-11 20:37:23 +01:00
<li>
<a href="../articles/benchmarks.html">
<span class="fa fa-shipping-fast"></span>
Other: benchmarks
</a>
</li>
2019-01-02 23:24:07 +01:00
</ul>
2018-12-23 21:26:21 +01:00
</li>
<li>
2018-12-29 22:24:19 +01:00
<a href="../reference/">
<span class="fa fa-book-open"></span>
Manual
</a>
2018-12-23 21:26:21 +01:00
</li>
<li>
2018-12-29 22:24:19 +01:00
<a href="../authors.html">
<span class="fa fa-users"></span>
Authors
</a>
2018-12-23 21:26:21 +01:00
</li>
2018-12-29 22:24:19 +01:00
<li>
<a href="../news/">
<span class="far fa far fa-newspaper"></span>
2018-12-23 21:26:21 +01:00
2018-12-29 22:24:19 +01:00
Changelog
2018-12-23 21:26:21 +01:00
</a>
</li>
2019-01-02 23:24:07 +01:00
</ul>
<ul class="nav navbar-nav navbar-right">
<li>
2018-12-29 22:24:19 +01:00
<a href="https://gitlab.com/msberends/AMR">
<span class="fab fa fab fa-gitlab"></span>
Source Code
</a>
2018-12-23 21:26:21 +01:00
</li>
2019-01-02 23:24:07 +01:00
<li>
2018-12-29 22:24:19 +01:00
<a href="../LICENSE-text.html">
<span class="fa fa-book"></span>
Licence
</a>
</li>
2018-12-23 21:26:21 +01:00
</ul>
2019-09-25 15:43:22 +02:00
<form class="navbar-form navbar-right hidden-xs hidden-sm" role="search">
2018-12-29 22:24:19 +01:00
<div class="form-group">
<input type="search" class="form-control" name="search-input" id="search-input" placeholder="Search..." aria-label="Search for..." autocomplete="off">
</div>
</form>
2018-12-23 21:26:21 +01:00
</div><!--/.nav-collapse -->
</div><!--/.container -->
</div><!--/.navbar -->
2019-09-25 15:43:22 +02:00
2018-12-23 21:26:21 +01:00
</header>
<div class="row">
<div class="col-md-9 contents">
<div class="page-header">
<h1>Articles</h1>
</div>
<div class="section ">
<h3>All vignettes</h3>
<p class="section-desc"></p>
<ul>
2019-01-02 23:24:07 +01:00
<li><a href="AMR.html">How to conduct AMR analysis</a></li>
<li><a href="EUCAST.html">How to apply EUCAST rules</a></li>
2019-05-23 16:58:59 +02:00
<li><a href="MDR.html">How to determine multi-drug resistance (MDR)</a></li>
2019-02-14 15:18:17 +01:00
<li><a href="SPSS.html">How to import data from SPSS / SAS / Stata</a></li>
2019-01-29 00:06:50 +01:00
<li><a href="WHONET.html">How to work with WHONET data</a></li>
2019-01-11 20:37:23 +01:00
<li><a href="benchmarks.html">Benchmarks</a></li>
2019-02-11 10:27:10 +01:00
<li><a href="resistance_predict.html">How to predict antimicrobial resistance</a></li>
2018-12-23 21:26:21 +01:00
</ul>
</div>
</div>
</div>
2019-09-25 15:43:22 +02:00
2018-12-23 21:26:21 +01:00
<footer>
<div class="copyright">
2019-08-14 14:57:06 +02:00
<p>Developed by <a href='https://www.rug.nl/staff/m.s.berends/'>Matthijs S. Berends</a>, <a href='https://www.rug.nl/staff/c.f.luz/'>Christian F. Luz</a>, <a href='https://www.rug.nl/staff/a.w.friedrich/'>Alex W. Friedrich</a>, <a href='https://www.rug.nl/staff/b.sinha/'>Bhanu N. M. Sinha</a>, <a href='https://www.rug.nl/staff/c.j.albers/'>Casper J. Albers</a>, <a href='https://www.rug.nl/staff/c.glasner/'>Corinna Glasner</a>.</p>
2018-12-23 21:26:21 +01:00
</div>
<div class="pkgdown">
2019-09-25 15:43:22 +02:00
<p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.4.1.</p>
2018-12-23 21:26:21 +01:00
</div>
2019-09-25 15:43:22 +02:00
2018-12-23 21:26:21 +01:00
</footer>
</div>
2018-12-29 22:24:19 +01:00
<script src="https://cdnjs.cloudflare.com/ajax/libs/docsearch.js/2.6.1/docsearch.min.js" integrity="sha256-GKvGqXDznoRYHCwKXGnuchvKSwmx9SRMrZOTh2g4Sb0=" crossorigin="anonymous"></script>
<script>
docsearch({
apiKey: 'f737050abfd4d726c63938e18f8c496e',
indexName: 'amr',
inputSelector: 'input#search-input.form-control',
transformData: function(hits) {
return hits.map(function (hit) {
hit.url = updateHitURL(hit);
return hit;
});
}
});
</script>
2018-12-23 21:26:21 +01:00
2019-09-25 15:43:22 +02:00
2018-12-23 21:26:21 +01:00
</body>
</html>
2019-09-25 15:43:22 +02:00