AMR/tests/testthat/test-mdro.R

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context("mdro.R")
test_that("MDRO works", {
library(dplyr)
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outcome <- MDRO(septic_patients, "EUCAST", info = FALSE)
# check class
expect_equal(outcome %>% class(), c('ordered', 'factor'))
outcome <- MDRO(septic_patients, "nl", info = FALSE)
# check class
expect_equal(outcome %>% class(), c('ordered', 'factor'))
# septic_patients should have these finding using Dutch guidelines
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expect_equal(outcome %>% freq(as.data.frame = TRUE) %>% pull(count), c(3, 21))
expect_equal(BRMO(septic_patients, info = FALSE), MDRO(septic_patients, "nl", info = FALSE))
})