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AMR/data-raw/clinical_breakpoints.xpt

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Update clinical breakpoints and fix some `as.mo()` bugs (#117) * Updates clinical breakpoints EUCAST/CLSI 2023, fixes #102, fixes #112, fixes #113, fixes #114, fixes #115 * docs * implement ecoffs * unit tests
2023-06-22 15:10:59 +02:00
HEADER RECORD*******LIBV8 HEADER RECORD!!!!!!!000000000000000000000000000000 SAS SAS SASLIB 6.06 bsd4.2 09JUN23:22:30:4809JUN23:22:30:48 HEADER RECORD*******MEMBV8 HEADER RECORD!!!!!!!000000000000000001600000000140 HEADER RECORD*******DSCPTV8 HEADER RECORD!!!!!!!000000000000000000000000000000 SAS clinical_breakpoints SASDATA 6.06 bsd4.2 09JUN23:22:30:4809JUN23:22:30:48 HEADER RECORD*******NAMSTV8 HEADER RECORD!!!!!!!000000001400000000000000000000  guidelin guideline method method <site site mo Kmo (mo_name ]mo_name rank_ind  <00>rank_index ab <00>ab ab_name <00>ab_name + ref_tbl <00>ref_tbl 
disk_dos <00>disk_dose  breakpoi  <00>breakpoint_S  breakpoi  <00>breakpoint_R  ecoff  <00>ecoff uti  <00>uti HEADER RECORD*******OBSV8 HEADER RECORD!!!!!!!000000000000000000000000000000 EUCAST 2023MIC F_ASPRG_MGTS Aspergillus fumigatus A AMBAmphotericin B Aspergillus AA.EUCAST 2023MIC F_ASPRG_NIGR Aspergillus niger A AMBAmphotericin B Aspergillus AA.EUCAST 2023MIC F_CANDD_ALBC Candida albicans A AMBAmphotericin B Candida AA.EUCAST 2023MIC F_CANDD_DBLN Candida dubliniensis A AMBAmphotericin B Candida AA.EUCAST 2023MIC F_CANDD_GLBR Candida glabrata A AMBAmphotericin B Candida AA.EUCAST 2023MIC F_CANDD_KRUS Candida krusei A AMBAmphotericin B Candida AA.EUCAST 2023MIC F_CANDD_PRPS Candida parapsilosis A AMBAmphotericin B Candida AA.EUCAST 2023MIC F_CANDD_TRPC Candida tropicalis A AMBAmphotericin B Candida AA.EUCAST 2023MIC F_CRYPT_NFRM Cryptococcus neoformans A AMBAmphotericin B Candida AA.EUCAST 2023MIC B_ANAER-NEG (unknown anaerobic Gram-negatives) A`AMCAmoxicillin/clavulanic acid Gram-negative anaerobes A@A<>.EUCAST 2023MIC B_ANAER-POS (unknown anaerobic Gram-positives) A`AMCAmoxicillin/clavulanic acid Gram-positive anaerobes A@A<>.EUCAST 2023DISK B_BRKHL_PSDM Burkholderia pseudomallei A AMCAmoxicillin/clavulanic acid B. pseudomallei 20ug/10ug B2B.EUCAST 2023MIC B_BRKHL_PSDM Burkholderia pseudomallei A