AMR/R/p_symbol.R

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# ==================================================================== #
# TITLE #
# Antimicrobial Resistance (AMR) Analysis #
# #
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# SOURCE #
# https://gitlab.com/msberends/AMR #
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# #
# LICENCE #
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# (c) 2019 Berends MS (m.s.berends@umcg.nl), Luz CF (c.f.luz@umcg.nl) #
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# #
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# This R package is free software; you can freely use and distribute #
# it for both personal and commercial purposes under the terms of the #
# GNU General Public License version 2.0 (GNU GPL-2), as published by #
# the Free Software Foundation. #
# #
# This R package was created for academic research and was publicly #
# released in the hope that it will be useful, but it comes WITHOUT #
# ANY WARRANTY OR LIABILITY. #
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# Visit our website for more info: https://msberends.gitlab.io/AMR. #
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# ==================================================================== #
#' Symbol of a p-value
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#'
#' Return the symbol related to the p-value: 0 '`***`' 0.001 '`**`' 0.01 '`*`' 0.05 '`.`' 0.1 ' ' 1. Values above `p = 1` will return `NA`.
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#' @param p p value
#' @param emptychar text to show when `p > 0.1`
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#' @return Text
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#' @inheritSection AMR Read more on our website!
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#' @export
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p_symbol <- function(p, emptychar = " ") {
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p <- as.double(p)
s <- rep(NA_character_, length(p))
s[p <= 1] <- emptychar
s[p <= 0.100] <- "."
s[p <= 0.050] <- "*"
s[p <= 0.010] <- "**"
s[p <= 0.001] <- "***"
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s
}