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< title > Get ATC properties from WHOCC website — atc_online_property • AMR (for R)< / title >
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< h1 > Get ATC properties from WHOCC website< / h1 >
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< div class = "hidden name" > < code > atc_online.Rd< / code > < / div >
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< div class = "ref-description" >
< p > Gets data from the WHO to determine properties of an ATC (e.g. an antibiotic) like name, defined daily dose (DDD) or standard unit. < br / > < strong > This function requires an internet connection.< / strong > < / p >
< / div >
< pre class = "usage" > < span class = 'fu' > atc_online_property< / span > (< span class = 'no' > atc_code< / span > , < span class = 'no' > property< / span > , < span class = 'kw' > administration< / span > < span class = 'kw' > =< / span > < span class = 'st' > "O"< / span > ,
< span class = 'kw' > url< / span > < span class = 'kw' > =< / span > < span class = 'st' > "https://www.whocc.no/atc_ddd_index/?code=%s& showdescription=no"< / span > )
< span class = 'fu' > atc_online_groups< / span > (< span class = 'no' > atc_code< / span > , < span class = 'no' > ...< / span > )
< span class = 'fu' > atc_online_ddd< / span > (< span class = 'no' > atc_code< / span > , < span class = 'no' > ...< / span > )< / pre >
< h2 class = "hasAnchor" id = "arguments" > < a class = "anchor" href = "#arguments" > < / a > Arguments< / h2 >
< table class = "ref-arguments" >
< colgroup > < col class = "name" / > < col class = "desc" / > < / colgroup >
< tr >
< th > atc_code< / th >
< td > < p > a character or character vector with ATC code(s) of antibiotic(s)< / p > < / td >
< / tr >
< tr >
< th > property< / th >
< td > < p > property of an ATC code. Valid values are < code > "ATC"< / code > , < code > "Name"< / code > , < code > "DDD"< / code > , < code > "U"< / code > (< code > "unit"< / code > ), < code > "Adm.R"< / code > , < code > "Note"< / code > and < code > groups< / code > . For this last option, all hierarchical groups of an ATC code will be returned, see Examples.< / p > < / td >
< / tr >
< tr >
< th > administration< / th >
< td > < p > type of administration when using < code > property = "Adm.R"< / code > , see Details< / p > < / td >
< / tr >
< tr >
< th > url< / th >
< td > < p > url of website of the WHO. The sign < code > %s< / code > can be used as a placeholder for ATC codes.< / p > < / td >
< / tr >
< tr >
< th > ...< / th >
< td > < p > parameters to pass on to < code > atc_property< / code > < / p > < / td >
< / tr >
< / table >
< h2 class = "hasAnchor" id = "source" > < a class = "anchor" href = "#source" > < / a > Source< / h2 >
< p > < a href = 'https://www.whocc.no/atc_ddd_alterations__cumulative/ddd_alterations/abbrevations/' > https://www.whocc.no/atc_ddd_alterations__cumulative/ddd_alterations/abbrevations/< / a > < / p >
< h2 class = "hasAnchor" id = "details" > < a class = "anchor" href = "#details" > < / a > Details< / h2 >
< p > Options for parameter < code > administration< / code > :< / p > < ul >
< li > < p > < code > "Implant"< / code > = Implant< / p > < / li >
< li > < p > < code > "Inhal"< / code > = Inhalation< / p > < / li >
< li > < p > < code > "Instill"< / code > = Instillation< / p > < / li >
< li > < p > < code > "N"< / code > = nasal< / p > < / li >
< li > < p > < code > "O"< / code > = oral< / p > < / li >
< li > < p > < code > "P"< / code > = parenteral< / p > < / li >
< li > < p > < code > "R"< / code > = rectal< / p > < / li >
< li > < p > < code > "SL"< / code > = sublingual/buccal< / p > < / li >
< li > < p > < code > "TD"< / code > = transdermal< / p > < / li >
< li > < p > < code > "V"< / code > = vaginal< / p > < / li >
< / ul >
< p > Abbreviations of return values when using < code > property = "U"< / code > (unit):< / p > < ul >
< li > < p > < code > "g"< / code > = gram< / p > < / li >
< li > < p > < code > "mg"< / code > = milligram< / p > < / li >
< li > < p > < code > "mcg"< / code > = microgram< / p > < / li >
< li > < p > < code > "U"< / code > = unit< / p > < / li >
< li > < p > < code > "TU"< / code > = thousand units< / p > < / li >
< li > < p > < code > "MU"< / code > = million units< / p > < / li >
< li > < p > < code > "mmol"< / code > = millimole< / p > < / li >
< li > < p > < code > "ml"< / code > = milliliter (e.g. eyedrops)< / p > < / li >
< / ul >
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< h2 class = "hasAnchor" id = "read-more-on-our-website-" > < a class = "anchor" href = "#read-more-on-our-website-" > < / a > Read more on our website!< / h2 >
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< p > On our website < a href = 'https://msberends.gitlab.io/AMR' > https://msberends.gitlab.io/AMR< / a > you can find < a href = 'https://msberends.gitlab.io/AMR/articles/AMR.html' > a tutorial< / a > about how to conduct AMR analysis, the < a href = 'https://msberends.gitlab.io/AMR/reference' > complete documentation of all functions< / a > (which reads a lot easier than here in R) and < a href = 'https://msberends.gitlab.io/AMR/articles/WHONET.html' > an example analysis using WHONET data< / a > .< / p >
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< h2 class = "hasAnchor" id = "examples" > < a class = "anchor" href = "#examples" > < / a > Examples< / h2 >
< pre class = "examples" > < span class = 'co' > # NOT RUN {< / span >
< span class = 'co' > # oral DDD (Defined Daily Dose) of amoxicillin< / span >
< span class = 'fu' > atc_online_property< / span > (< span class = 'st' > "J01CA04"< / span > , < span class = 'st' > "DDD"< / span > , < span class = 'st' > "O"< / span > )
< span class = 'co' > # parenteral DDD (Defined Daily Dose) of amoxicillin< / span >
< span class = 'fu' > atc_online_property< / span > (< span class = 'st' > "J01CA04"< / span > , < span class = 'st' > "DDD"< / span > , < span class = 'st' > "P"< / span > )
< span class = 'fu' > atc_online_property< / span > (< span class = 'st' > "J01CA04"< / span > , < span class = 'kw' > property< / span > < span class = 'kw' > =< / span > < span class = 'st' > "groups"< / span > ) < span class = 'co' > # search hierarchical groups of amoxicillin< / span >
< span class = 'co' > # [1] "ANTIINFECTIVES FOR SYSTEMIC USE"< / span >
< span class = 'co' > # [2] "ANTIBACTERIALS FOR SYSTEMIC USE"< / span >
< span class = 'co' > # [3] "BETA-LACTAM ANTIBACTERIALS, PENICILLINS"< / span >
< span class = 'co' > # [4] "Penicillins with extended spectrum"< / span >
< span class = 'co' > # }< / span > < / pre >
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