2018-12-16 22:45:12 +01:00
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# ==================================================================== #
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# TITLE #
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# Antimicrobial Resistance (AMR) Analysis #
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# #
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# AUTHORS #
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# Berends MS (m.s.berends@umcg.nl), Luz CF (c.f.luz@umcg.nl) #
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# #
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# LICENCE #
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# This package is free software; you can redistribute it and/or modify #
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# it under the terms of the GNU General Public License version 2.0, #
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# as published by the Free Software Foundation. #
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# #
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# This R package is distributed in the hope that it will be useful, #
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# but WITHOUT ANY WARRANTY; without even the implied warranty of #
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the #
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# GNU General Public License version 2.0 for more details. #
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# ==================================================================== #
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2018-08-25 22:01:14 +02:00
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context("mic.R")
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2018-03-27 17:43:42 +02:00
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test_that("mic works", {
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expect_true(as.mic(8) == as.mic("8"))
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expect_true(as.mic("1") > as.mic("<=0.0625"))
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expect_true(as.mic("1") < as.mic(">=32"))
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expect_true(is.mic(as.mic(8)))
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2018-04-02 16:05:09 +02:00
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2018-03-27 17:43:42 +02:00
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expect_equal(as.double(as.mic(">=32")), 32)
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2018-08-24 11:08:20 +02:00
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expect_equal(as.numeric(as.mic(">=32")), 32)
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2018-03-27 17:43:42 +02:00
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expect_equal(as.integer(as.mic(">=32")), 32)
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expect_equal(suppressWarnings(as.logical(as.mic("INVALID VALUE"))), NA)
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2018-04-02 16:05:09 +02:00
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2018-08-24 11:08:20 +02:00
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# all levels should be valid MICs
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expect_silent(as.mic(levels(as.mic(1))))
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expect_warning(as.mic("INVALID VALUE"))
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2018-04-02 16:05:09 +02:00
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# print plots, should not raise errors
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barplot(as.mic(c(1, 2, 4, 8)))
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plot(as.mic(c(1, 2, 4, 8)))
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print(as.mic(c(1, 2, 4, 8)))
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2018-12-07 12:04:55 +01:00
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expect_equal(summary(as.mic(c(2, 8))), c("Class" = "mic",
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2018-03-27 17:43:42 +02:00
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"<NA>" = "0",
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"Min." = "2",
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"Max." = "8"))
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})
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