1
0
mirror of https://github.com/msberends/AMR.git synced 2024-12-26 06:06:12 +01:00
AMR/authors.html

200 lines
14 KiB
HTML
Raw Normal View History

2022-08-21 16:59:35 +02:00
<!DOCTYPE html>
2024-07-16 15:00:55 +02:00
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Authors and Citation • AMR (for R)</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="apple-touch-icon-60x60.png"><script src="deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="deps/Lato-0.4.9/font.css" rel="stylesheet"><link href="deps/Fira_Code-0.4.9/font.css" rel="stylesheet"><link href="deps/font-awesome-6.4.2/css/all.min.css" rel="stylesheet"><link href="deps/font-awesome-6.4.2/css/v4-shims.min.css" rel="stylesheet"><script src="deps/headroom-0.11.0/headroom.min.js"></script><script src="deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="deps/search-1.0.0/fuse.min.js"></script><script src="deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="pkgdown.js"></script><link href="extra.css" rel="stylesheet"><script src="extra.js"></script><meta property="og:title" content="Authors and Citation"><meta property="og:image" content="https://msberends.github.io/AMR/logo.svg"><meta name="twitter:card" content="summary_large_image"><meta name="twitter:creator" content="@msberends"><meta name="twitter:site" content="@msberends"></head><body>
2022-08-21 16:59:35 +02:00
<a href="#main" class="visually-hidden-focusable">Skip to contents</a>
2024-07-16 15:00:55 +02:00
<nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
2022-08-21 16:59:35 +02:00
<a class="navbar-brand me-2" href="index.html">AMR (for R)</a>
2024-07-16 16:16:29 +02:00
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9066</small>
2024-07-16 15:00:55 +02:00
2022-08-21 16:59:35 +02:00
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
<span class="navbar-toggler-icon"></span>
</button>
<div id="navbar" class="collapse navbar-collapse ms-3">
2023-05-24 16:03:18 +02:00
<ul class="navbar-nav me-auto"><li class="nav-item dropdown">
2024-07-16 15:00:55 +02:00
<button class="nav-link dropdown-toggle" type="button" id="dropdown-how-to" data-bs-toggle="dropdown" aria-expanded="false" aria-haspopup="true"><span class="fa fa-question-circle"></span> How to</button>
<ul class="dropdown-menu" aria-labelledby="dropdown-how-to"><li><a class="dropdown-item" href="articles/AMR.html"><span class="fa fa-directions"></span> Conduct AMR Analysis</a></li>
<li><a class="dropdown-item" href="reference/antibiogram.html"><span class="fa fa-file-prescription"></span> Generate Antibiogram (Trad./Syndromic/WISCA)</a></li>
<li><a class="dropdown-item" href="articles/resistance_predict.html"><span class="fa fa-dice"></span> Predict Antimicrobial Resistance</a></li>
<li><a class="dropdown-item" href="articles/datasets.html"><span class="fa fa-database"></span> Download Data Sets for Own Use</a></li>
<li><a class="dropdown-item" href="reference/AMR-options.html"><span class="fa fa-gear"></span> Set User- Or Team-specific Package Settings</a></li>
<li><a class="dropdown-item" href="articles/PCA.html"><span class="fa fa-compress"></span> Conduct Principal Component Analysis for AMR</a></li>
<li><a class="dropdown-item" href="articles/MDR.html"><span class="fa fa-skull-crossbones"></span> Determine Multi-Drug Resistance (MDR)</a></li>
<li><a class="dropdown-item" href="articles/WHONET.html"><span class="fa fa-globe-americas"></span> Work with WHONET Data</a></li>
<li><a class="dropdown-item" href="articles/EUCAST.html"><span class="fa fa-exchange-alt"></span> Apply Eucast Rules</a></li>
<li><a class="dropdown-item" href="reference/mo_property.html"><span class="fa fa-bug"></span> Get Taxonomy of a Microorganism</a></li>
<li><a class="dropdown-item" href="reference/ab_property.html"><span class="fa fa-capsules"></span> Get Properties of an Antibiotic Drug</a></li>
<li><a class="dropdown-item" href="reference/av_property.html"><span class="fa fa-capsules"></span> Get Properties of an Antiviral Drug</a></li>
</ul></li>
2023-05-24 16:03:18 +02:00
<li class="nav-item dropdown">
2024-07-16 15:00:55 +02:00
<button class="nav-link dropdown-toggle" type="button" id="dropdown-with-other-pkgs" data-bs-toggle="dropdown" aria-expanded="false" aria-haspopup="true"><span class="fa fa-layer-group"></span> With other pkgs</button>
<ul class="dropdown-menu" aria-labelledby="dropdown-with-other-pkgs"><li><a class="dropdown-item" href="articles/other_pkg.html"><span class="fa fa-layer-group"></span> AMR &amp; dplyr/tidyverse</a></li>
<li><a class="dropdown-item" href="articles/other_pkg.html"><span class="fa fa-layer-group"></span> AMR &amp; data.table</a></li>
<li><a class="dropdown-item" href="articles/other_pkg.html"><span class="fa fa-layer-group"></span> AMR &amp; tidymodels</a></li>
<li><a class="dropdown-item" href="articles/other_pkg.html"><span class="fa fa-layer-group"></span> AMR &amp; base R</a></li>
</ul></li>
<li class="nav-item"><a class="nav-link" href="reference/index.html"><span class="fa fa-book-open"></span> Manual</a></li>
<li class="active nav-item"><a class="nav-link" href="authors.html"><span class="fa fa-users"></span> Authors</a></li>
</ul><ul class="navbar-nav"><li class="nav-item"><a class="nav-link" href="news/index.html"><span class="fa far fa-newspaper"></span> Changelog</a></li>
<li class="nav-item"><a class="external-link nav-link" href="https://github.com/msberends/AMR"><span class="fa fab fa-github"></span> Source Code</a></li>
2022-08-21 16:59:35 +02:00
</ul></div>
2024-07-16 15:00:55 +02:00
2022-08-21 16:59:35 +02:00
</div>
</nav><div class="container template-citation-authors">
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="logo.svg" class="logo" alt=""><h1>Authors and Citation</h1>
</div>
2024-07-16 15:00:55 +02:00
<div class="section level2">
2022-08-21 16:59:35 +02:00
<h2>Authors</h2>
2024-07-16 15:00:55 +02:00
2022-08-21 16:59:35 +02:00
<ul class="list-unstyled"><li>
<p><strong>Matthijs S. Berends</strong>. Author, maintainer. <a href="https://orcid.org/0000-0001-7620-1800" target="orcid.widget" aria-label="ORCID" class="external-link"><span class="fab fa-orcid orcid" aria-hidden="true"></span></a>
</p>
</li>
<li>
<p><strong>Dennis Souverein</strong>. Author, contributor. <a href="https://orcid.org/0000-0003-0455-0336" target="orcid.widget" aria-label="ORCID" class="external-link"><span class="fab fa-orcid orcid" aria-hidden="true"></span></a>
</p>
</li>
<li>
2024-07-16 15:00:55 +02:00
<p><strong>Erwin E. A. Hassing</strong>. Author, contributor.
2022-08-21 16:59:35 +02:00
</p>
</li>
<li>
2022-08-28 22:45:38 +02:00
<p><strong>Casper J. Albers</strong>. Thesis advisor. <a href="https://orcid.org/0000-0002-9213-6743" target="orcid.widget" aria-label="ORCID" class="external-link"><span class="fab fa-orcid orcid" aria-hidden="true"></span></a>
2022-08-21 16:59:35 +02:00
</p>
</li>
<li>
<p><strong>Peter Dutey-Magni</strong>. Contributor. <a href="https://orcid.org/0000-0002-8942-9836" target="orcid.widget" aria-label="ORCID" class="external-link"><span class="fab fa-orcid orcid" aria-hidden="true"></span></a>
</p>
</li>
<li>
2024-07-16 15:00:55 +02:00
<p><strong>Judith M. Fonville</strong>. Contributor.
2022-08-21 16:59:35 +02:00
</p>
</li>
<li>
2022-08-28 22:45:38 +02:00
<p><strong>Alex W. Friedrich</strong>. Thesis advisor. <a href="https://orcid.org/0000-0003-4881-038X" target="orcid.widget" aria-label="ORCID" class="external-link"><span class="fab fa-orcid orcid" aria-hidden="true"></span></a>
2022-08-21 16:59:35 +02:00
</p>
</li>
<li>
<p><strong>Corinna Glasner</strong>. Thesis advisor. <a href="https://orcid.org/0000-0003-1241-1328" target="orcid.widget" aria-label="ORCID" class="external-link"><span class="fab fa-orcid orcid" aria-hidden="true"></span></a>
</p>
</li>
<li>
2024-07-16 15:00:55 +02:00
<p><strong>Eric H. L. C. M. Hazenberg</strong>. Contributor.
2022-08-21 16:59:35 +02:00
</p>
</li>
<li>
<p><strong>Gwen Knight</strong>. Contributor. <a href="https://orcid.org/0000-0002-7263-9896" target="orcid.widget" aria-label="ORCID" class="external-link"><span class="fab fa-orcid orcid" aria-hidden="true"></span></a>
</p>
</li>
<li>
<p><strong>Annick Lenglet</strong>. Contributor. <a href="https://orcid.org/0000-0003-2013-8405" target="orcid.widget" aria-label="ORCID" class="external-link"><span class="fab fa-orcid orcid" aria-hidden="true"></span></a>
</p>
</li>
2024-02-24 18:58:43 +01:00
<li>
<p><strong>Christian F. Luz</strong>. Contributor. <a href="https://orcid.org/0000-0001-5809-5995" target="orcid.widget" aria-label="ORCID" class="external-link"><span class="fab fa-orcid orcid" aria-hidden="true"></span></a>
</p>
</li>
2022-08-21 16:59:35 +02:00
<li>
2024-07-16 15:00:55 +02:00
<p><strong>Bart C. Meijer</strong>. Contributor.
2022-08-28 22:45:38 +02:00
</p>
</li>
<li>
2024-07-16 15:00:55 +02:00
<p><strong>Dmytro Mykhailenko</strong>. Contributor.
2022-08-21 16:59:35 +02:00
</p>
</li>
<li>
2024-07-16 15:00:55 +02:00
<p><strong>Anton Mymrikov</strong>. Contributor.
2022-08-21 16:59:35 +02:00
</p>
</li>
2023-01-12 23:23:33 +01:00
<li>
<p><strong>Andrew P. Norgan</strong>. Contributor. <a href="https://orcid.org/0000-0002-2955-2066" target="orcid.widget" aria-label="ORCID" class="external-link"><span class="fab fa-orcid orcid" aria-hidden="true"></span></a>
</p>
</li>
2022-08-21 16:59:35 +02:00
<li>
<p><strong>Sofia Ny</strong>. Contributor. <a href="https://orcid.org/0000-0002-2017-1363" target="orcid.widget" aria-label="ORCID" class="external-link"><span class="fab fa-orcid orcid" aria-hidden="true"></span></a>
</p>
</li>
2024-02-24 18:58:43 +01:00
<li>
2024-07-16 15:00:55 +02:00
<p><strong>Matthew Saab</strong>. Contributor.
2024-02-24 18:58:43 +01:00
</p>
</li>
2022-10-21 22:03:48 +02:00
<li>
2024-07-16 15:00:55 +02:00
<p><strong>Jonas Salm</strong>. Contributor.
2022-10-21 22:03:48 +02:00
</p>
</li>
2024-02-24 18:58:43 +01:00
<li>
<p><strong>Javier Sanchez</strong>. Contributor. <a href="https://orcid.org/0000-0003-2605-8094" target="orcid.widget" aria-label="ORCID" class="external-link"><span class="fab fa-orcid orcid" aria-hidden="true"></span></a>
</p>
</li>
2022-08-21 16:59:35 +02:00
<li>
2024-07-16 15:00:55 +02:00
<p><strong>Rogier P. Schade</strong>. Contributor.
2022-08-21 16:59:35 +02:00
</p>
</li>
<li>
2022-08-28 22:45:38 +02:00
<p><strong>Bhanu N. M. Sinha</strong>. Thesis advisor. <a href="https://orcid.org/0000-0003-1634-0010" target="orcid.widget" aria-label="ORCID" class="external-link"><span class="fab fa-orcid orcid" aria-hidden="true"></span></a>
2022-08-21 16:59:35 +02:00
</p>
</li>
2024-02-24 18:58:43 +01:00
<li>
<p><strong>Jason Stull</strong>. Contributor. <a href="https://orcid.org/0000-0002-9028-8153" target="orcid.widget" aria-label="ORCID" class="external-link"><span class="fab fa-orcid orcid" aria-hidden="true"></span></a>
</p>
</li>
2022-08-21 16:59:35 +02:00
<li>
<p><strong>Anthony Underwood</strong>. Contributor. <a href="https://orcid.org/0000-0002-8547-4277" target="orcid.widget" aria-label="ORCID" class="external-link"><span class="fab fa-orcid orcid" aria-hidden="true"></span></a>
</p>
</li>
2023-02-10 16:26:36 +01:00
<li>
<p><strong>Anita Williams</strong>. Contributor. <a href="https://orcid.org/0000-0002-5295-8451" target="orcid.widget" aria-label="ORCID" class="external-link"><span class="fab fa-orcid orcid" aria-hidden="true"></span></a>
</p>
</li>
2022-08-21 16:59:35 +02:00
</ul></div>
2024-07-16 15:00:55 +02:00
<div class="section level2">
2022-08-21 16:59:35 +02:00
<h2 id="citation">Citation</h2>
2024-07-16 15:00:55 +02:00
<p><small class="dont-index">Source: <a href="https://github.com/msberends/AMR/blob/main/inst/CITATION" class="external-link"><code>inst/CITATION</code></a></small></p>
2022-08-21 16:59:35 +02:00
2022-10-05 12:32:07 +02:00
<p>Berends MS, Luz CF, Friedrich AW, Sinha BNM, Albers CJ, Glasner C (2022).
“AMR: An R Package for Working with Antimicrobial Resistance Data.”
<em>Journal of Statistical Software</em>, <b>104</b>(3), 131.
2024-07-16 15:00:55 +02:00
<a href="https://doi.org/10.18637/jss.v104.i03" class="external-link">doi:10.18637/jss.v104.i03</a>.
2022-10-05 12:32:07 +02:00
</p>
2022-08-21 16:59:35 +02:00
<pre>@Article{,
2022-10-05 12:32:07 +02:00
title = {{AMR}: An {R} Package for Working with Antimicrobial Resistance Data},
author = {Matthijs S. Berends and Christian F. Luz and Alexander W. Friedrich and Bhanu N. M. Sinha and Casper J. Albers and Corinna Glasner},
2022-08-21 16:59:35 +02:00
journal = {Journal of Statistical Software},
2022-10-05 12:32:07 +02:00
year = {2022},
volume = {104},
number = {3},
pages = {1--31},
doi = {10.18637/jss.v104.i03},
2022-08-21 16:59:35 +02:00
}</pre>
</div>
2024-07-16 15:00:55 +02:00
</main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
2022-08-21 16:59:35 +02:00
</nav></aside></div>
<footer><div class="pkgdown-footer-left">
2024-04-23 10:39:01 +02:00
<p><code>AMR</code> (for R). Free and open-source, licenced under the <a target="_blank" href="https://github.com/msberends/AMR/blob/main/LICENSE" class="external-link">GNU General Public License version 2.0 (GPL-2)</a>.<br>Developed at the <a target="_blank" href="https://www.rug.nl" class="external-link">University of Groningen</a> and <a target="_blank" href="https://www.umcg.nl" class="external-link">University Medical Center Groningen</a> in The Netherlands.</p>
2022-08-21 16:59:35 +02:00
</div>
<div class="pkgdown-footer-right">
2024-04-23 10:39:01 +02:00
<p><a target="_blank" href="https://www.rug.nl" class="external-link"><img src="https://github.com/msberends/AMR/raw/main/pkgdown/logos/logo_rug.svg" style="max-width: 150px;"></a><a target="_blank" href="https://www.umcg.nl" class="external-link"><img src="https://github.com/msberends/AMR/raw/main/pkgdown/logos/logo_umcg.svg" style="max-width: 150px;"></a></p>
2022-08-21 16:59:35 +02:00
</div>
</footer></div>
2024-07-16 15:00:55 +02:00
2022-08-21 16:59:35 +02:00
</body></html>