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<p>According to the binomial nomenclature, the lowest four taxonomic levels (family, genus, species, subspecies) should be printed in italics. This function finds taxonomic names within strings and makes them italic.</p>
<span><spanclass="fu">italicize_taxonomy</span><spanclass="op">(</span><spanclass="va">string</span>, type <spanclass="op">=</span><spanclass="fu"><ahref="https://rdrr.io/r/base/c.html"class="external-link">c</a></span><spanclass="op">(</span><spanclass="st">"markdown"</span>, <spanclass="st">"ansi"</span>, <spanclass="st">"html"</span><spanclass="op">)</span><spanclass="op">)</span></span></code></pre></div>
<p>The taxonomic names can be italicised using markdown (the default) by adding <code>*</code> before and after the taxonomic names, or <code><i></code> and <code></i></code> when using html. When using 'ansi', ANSI colours will be added using <code>\033[3m</code> before and <code>\033[23m</code> after the taxonomic names. If multiple ANSI colours are not available, no conversion will occur.</p>
<divclass="sourceCode"><preclass="sourceCode r"><code><spanclass="r-in"><span><spanclass="fu">italicise_taxonomy</span><spanclass="op">(</span><spanclass="st">"An overview of Staphylococcus aureus isolates"</span><spanclass="op">)</span></span></span>
<spanclass="r-out co"><spanclass="r-pr">#></span> [1] "An overview of *Staphylococcus aureus* isolates"</span>
<spanclass="r-in"><span><spanclass="fu">italicise_taxonomy</span><spanclass="op">(</span><spanclass="st">"An overview of S. aureus isolates"</span><spanclass="op">)</span></span></span>
<spanclass="r-out co"><spanclass="r-pr">#></span> [1] "An overview of *S. aureus* isolates"</span>
<spanclass="r-in"><span></span></span>
<spanclass="r-in"><span><spanclass="fu"><ahref="https://rdrr.io/r/base/cat.html"class="external-link">cat</a></span><spanclass="op">(</span><spanclass="fu">italicise_taxonomy</span><spanclass="op">(</span><spanclass="st">"An overview of S. aureus isolates"</span>, type <spanclass="op">=</span><spanclass="st">"ansi"</span><spanclass="op">)</span><spanclass="op">)</span></span></span>
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