mirror of https://github.com/msberends/AMR.git
32 lines
1.4 KiB
R
32 lines
1.4 KiB
R
|
context("EUCAST.R")
|
||
|
|
|
||
|
|
test_that("EUCAST rules work", {
|
||
|
|
a <- data.frame(bactid = c("KLEPNE", # Klebsiella pneumoniae
|
||
|
|
"PSEAER", # Pseudomonas aeruginosa
|
||
|
|
"ENTAER"), # Enterobacter aerogenes
|
||
|
|
amox = "-", # Amoxicillin
|
||
|
|
stringsAsFactors = FALSE)
|
||
|
|
b <- data.frame(bactid = c("KLEPNE", # Klebsiella pneumoniae
|
||
|
|
"PSEAER", # Pseudomonas aeruginosa
|
||
|
|
"ENTAER"), # Enterobacter aerogenes
|
||
|
|
amox = "R", # Amoxicillin
|
||
|
|
stringsAsFactors = FALSE)
|
||
|
|
expect_equal(EUCAST_rules(a, info = FALSE), b)
|
||
|
|
expect_equal(interpretive_reading(a, info = FALSE), b)
|
||
|
|
|
||
|
|
a <- data.frame(bactid = c("STAAUR", # Staphylococcus aureus
|
||
|
|
"STCGRA"), # Streptococcus pyognenes (Lancefield Group A)
|
||
|
|
coli = "-", # Colistin
|
||
|
|
stringsAsFactors = FALSE)
|
||
|
|
b <- data.frame(bactid = c("STAAUR", # Staphylococcus aureus
|
||
|
|
"STCGRA"), # Streptococcus pyognenes (Lancefield Group A)
|
||
|
|
coli = "R", # Colistin
|
||
|
|
stringsAsFactors = FALSE)
|
||
|
|
expect_equal(EUCAST_rules(a, info = FALSE), b)
|
||
|
|
})
|
||
|
|
|
||
|
|
test_that("MO properties work", {
|
||
|
|
expect_equal(mo_property("ESCCOL"), "Escherichia coli")
|
||
|
|
expect_equal(mo_property("STAAUR"), "Staphylococcus aureus")
|
||
|
|
})
|