mirror of https://github.com/msberends/AMR.git
24 lines
818 B
R
24 lines
818 B
R
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context("first_isolates.R")
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test_that("keyantibiotics work", {
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expect_equal(length(key_antibiotics(septic_patients, info = FALSE)), nrow(septic_patients))
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expect_true(key_antibiotics_equal("SSS", "SSS"))
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expect_true(key_antibiotics_equal("SSS", "SIS", ignore_I = TRUE))
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expect_false(key_antibiotics_equal("SSS", "SIS", ignore_I = FALSE))
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})
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test_that("guess_bactid works", {
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expect_equal(guess_bactid("E. coli"), "ESCCOL")
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expect_equal(guess_bactid("Escherichia coli"), "ESCCOL")
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})
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test_that("first isolates work", {
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# septic_patients contains 1960 out of 2000 first isolates
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expect_equal(sum(first_isolate(septic_patients,
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"date",
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"patient_id",
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"bactid",
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info = FALSE)), 1960)
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})
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