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(v1.6.0.9040) unit tests

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This commit is contained in:
dr. M.S. (Matthijs) Berends
2021-05-16 09:25:36 +02:00
parent 6c3ab19e3a
commit 00496e45b7
18 changed files with 72 additions and 79 deletions
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33
.github/workflows/check.yaml vendored
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@ -89,18 +89,10 @@ jobs:
steps:
- uses: actions/checkout@v2
- uses: r-lib/actions/setup-r@master
- uses: r-lib/actions/setup-r@v1
with:
r-version: ${{ matrix.config.r }}
# - uses: r-lib/actions/setup-pandoc@master
# - name: Query dependencies
# if: matrix.config.r != '3.0'
# run: |
# saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
# shell: Rscript {0}
- name: Install Linux dependencies
if: runner.os == 'Linux'
# update the below with sysreqs::sysreqs("DESCRIPTION") and check the "DEB" entries (for Ubuntu).
@ -108,7 +100,8 @@ jobs:
run: |
sudo apt install -y libssl-dev pandoc pandoc-citeproc libxml2-dev libicu-dev libcurl4-openssl-dev
- name: Cache R packages
- name: Restore cached R packages
# this step will add the step 'Post Restore cached R packages' on a succesful run
if: runner.os != 'Windows'
uses: actions/cache@v1
with:
@ -122,7 +115,7 @@ jobs:
source("data-raw/_install_deps.R")
shell: Rscript {0}
- name: Session info
- name: Show session info
run: |
options(width = 100)
utils::sessionInfo()
@ -137,8 +130,9 @@ jobs:
_R_CHECK_DEPENDS_ONLY_: true
_R_CHECK_LENGTH_1_CONDITION_: verbose
_R_CHECK_LENGTH_1_LOGIC2_: verbose
R_LIBS_USER: ${{ env.R_LIBS_USER }}
R_TINYTEST: true
# during 'R CMD check', R_LIBS_USER will be overwritten, so:
R_LIBS_USER_GH_ACTIONS: ${{ env.R_LIBS_USER }}
R_RUN_TINYTEST: true
run: |
tar -xf data-raw/AMR_latest.tar.gz
rm -rf AMR/vignettes
@ -153,8 +147,9 @@ jobs:
_R_CHECK_DEPENDS_ONLY_: true
_R_CHECK_LENGTH_1_CONDITION_: verbose
_R_CHECK_LENGTH_1_LOGIC2_: verbose
R_LIBS_USER: ${{ env.R_LIBS_USER }}
R_TINYTEST: true
# during 'R CMD check', R_LIBS_USER will be overwritten, so:
R_LIBS_USER_GH_ACTIONS: ${{ env.R_LIBS_USER }}
R_RUN_TINYTEST: true
run: |
tar -xf data-raw/AMR_latest.tar.gz
rm -rf AMR/vignettes
@ -167,9 +162,9 @@ jobs:
find . -name 'tinytest.Rout*' -exec cat '{}' \; || true
shell: bash
- name: Upload check results
if: failure()
uses: actions/upload-artifact@master
- name: Upload artifacts
if: always()
uses: actions/upload-artifact@v2
with:
name: ${{ matrix.config.os }}-r${{ matrix.config.r }}-results
name: artifacts-${{ matrix.config.os }}-r${{ matrix.config.r }}
path: AMR.Rcheck