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(v0.7.1.9102) lintr

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dr. M.S. (Matthijs) Berends
2019-10-11 17:21:02 +02:00
parent 59af355a89
commit 00cdb498a0
65 changed files with 620 additions and 812 deletions
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6
R/mo_property.R
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@ -158,8 +158,8 @@ mo_shortname <- function(x, language = get_locale(), ...) {
shortnames <- paste0(substr(mo_genus(x.mo, language = NULL), 1, 1), ". ", replace_empty(mo_species(x.mo, language = NULL)))
# exceptions for Staphylococci
shortnames[shortnames == "S. coagulase-negative" ] <- "CoNS"
shortnames[shortnames == "S. coagulase-positive" ] <- "CoPS"
shortnames[shortnames == "S. coagulase-negative"] <- "CoNS"
shortnames[shortnames == "S. coagulase-positive"] <- "CoPS"
# exceptions for Streptococci: Streptococcus Group A -> GAS
shortnames[shortnames %like% "S. group [ABCDFGHK]"] <- paste0("G", gsub("S. group ([ABCDFGHK])", "\\1", shortnames[shortnames %like% "S. group [ABCDFGHK]"]), "S")
@ -384,7 +384,7 @@ mo_url <- function(x, open = FALSE, ...) {
#' @rdname mo_property
#' @importFrom data.table data.table as.data.table setkey
#' @export
mo_property <- function(x, property = 'fullname', language = get_locale(), ...) {
mo_property <- function(x, property = "fullname", language = get_locale(), ...) {
if (length(property) != 1L) {
stop("'property' must be of length 1.")
}