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fix for Salmonella group A, unit tests

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dr. M.S. (Matthijs) Berends
2023-02-10 16:47:25 +01:00
parent bc434db835
commit 03294c7901
8 changed files with 20 additions and 16 deletions
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inst/tinytest/test-mo_property.R
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@ -163,7 +163,7 @@ expect_identical(mo_current(c("Escherichia blattae", "Escherichia coli")),
expect_identical(mo_ref("Chlamydia psittaci"), "Garcia-Lopez et al., 2019")
expect_identical(mo_ref("Chlamydophila psittaci", keep_synonyms = TRUE), "Everett et al., 1999")
expect_true(112283007 %in% mo_snomed("Escherichia coli"))
expect_true(112283007 %in% mo_snomed("Escherichia coli")[[1]])
# old codes must throw a warning in mo_* family
expect_warning(mo_name(c("B_ESCHR_COL", "B_STPHY_AUR")))
# outcome of mo_fullname must always return the fullname from the data set