mirror of https://github.com/msberends/AMR.git
(v1.2.0.9015) ab_from_text()
This commit is contained in:
parent
344bbd57f4
commit
033ca49817
|
@ -1,5 +1,5 @@
|
|||
Package: AMR
|
||||
Version: 1.2.0.9014
|
||||
Version: 1.2.0.9015
|
||||
Date: 2020-06-25
|
||||
Title: Antimicrobial Resistance Analysis
|
||||
Authors@R: c(
|
||||
|
|
|
@ -66,6 +66,7 @@ export(ab_atc_group2)
|
|||
export(ab_cid)
|
||||
export(ab_class)
|
||||
export(ab_ddd)
|
||||
export(ab_from_text)
|
||||
export(ab_group)
|
||||
export(ab_info)
|
||||
export(ab_loinc)
|
||||
|
|
4
NEWS.md
4
NEWS.md
|
@ -1,4 +1,4 @@
|
|||
# AMR 1.2.0.9014
|
||||
# AMR 1.2.0.9015
|
||||
## <small>Last updated: 25-Jun-2020</small>
|
||||
|
||||
### New
|
||||
|
@ -40,7 +40,7 @@
|
|||
* Fixed a bug in `bug_drug_combinations()` for when only one antibiotic was in the input data
|
||||
* Changed the summary for class `<mo>`, to highlight the %SI vs. %R
|
||||
* Improved error handling, giving more useful info when functions return an error
|
||||
* Algorithm improvements to `as.ab()`
|
||||
* Algorithm improvements to `as.ab()`, many more misspellings are now translatable
|
||||
* Added Monuril as trade name for fosfomycin
|
||||
|
||||
# AMR 1.2.0
|
||||
|
|
|
@ -30,6 +30,7 @@
|
|||
#' `df %>% mutate(abx = ab_from_text(clinical_text, collapse = "|"))`
|
||||
#'
|
||||
#' This function is also internally used by [as.ab()], although it then only returns the first hit.
|
||||
#' @export
|
||||
#' @examples
|
||||
#' # mind the bad spelling of amoxicillin in this line,
|
||||
#' # straight from a true health care record:
|
||||
|
|
|
@ -94,6 +94,7 @@ reference:
|
|||
contents:
|
||||
- starts_with("as.")
|
||||
- "`eucast_rules`"
|
||||
- "`ab_from_text`"
|
||||
- "`guess_ab_col`"
|
||||
- "`mo_source`"
|
||||
- title: "Enhancing your data"
|
||||
|
|
|
@ -81,7 +81,7 @@
|
|||
</button>
|
||||
<span class="navbar-brand">
|
||||
<a class="navbar-link" href="https://msberends.gitlab.io/AMR/index.html">AMR (for R)</a>
|
||||
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9014</span>
|
||||
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9015</span>
|
||||
</span>
|
||||
</div>
|
||||
|
||||
|
|
|
@ -81,7 +81,7 @@
|
|||
</button>
|
||||
<span class="navbar-brand">
|
||||
<a class="navbar-link" href="index.html">AMR (for R)</a>
|
||||
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9014</span>
|
||||
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9015</span>
|
||||
</span>
|
||||
</div>
|
||||
|
||||
|
|
|
@ -81,7 +81,7 @@
|
|||
</button>
|
||||
<span class="navbar-brand">
|
||||
<a class="navbar-link" href="../index.html">AMR (for R)</a>
|
||||
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9014</span>
|
||||
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9015</span>
|
||||
</span>
|
||||
</div>
|
||||
|
||||
|
|
|
@ -81,7 +81,7 @@
|
|||
</button>
|
||||
<span class="navbar-brand">
|
||||
<a class="navbar-link" href="index.html">AMR (for R)</a>
|
||||
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9014</span>
|
||||
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9015</span>
|
||||
</span>
|
||||
</div>
|
||||
|
||||
|
|
|
@ -43,7 +43,7 @@
|
|||
</button>
|
||||
<span class="navbar-brand">
|
||||
<a class="navbar-link" href="index.html">AMR (for R)</a>
|
||||
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9014</span>
|
||||
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9015</span>
|
||||
</span>
|
||||
</div>
|
||||
|
||||
|
|
|
@ -81,7 +81,7 @@
|
|||
</button>
|
||||
<span class="navbar-brand">
|
||||
<a class="navbar-link" href="../index.html">AMR (for R)</a>
|
||||
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9014</span>
|
||||
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9015</span>
|
||||
</span>
|
||||
</div>
|
||||
|
||||
|
@ -229,9 +229,9 @@
|
|||
<small>Source: <a href='https://gitlab.com/msberends/AMR/blob/master/NEWS.md'><code>NEWS.md</code></a></small>
|
||||
</div>
|
||||
|
||||
<div id="amr-1209014" class="section level1">
|
||||
<h1 class="page-header" data-toc-text="1.2.0.9014">
|
||||
<a href="#amr-1209014" class="anchor"></a>AMR 1.2.0.9014<small> Unreleased </small>
|
||||
<div id="amr-1209015" class="section level1">
|
||||
<h1 class="page-header" data-toc-text="1.2.0.9015">
|
||||
<a href="#amr-1209015" class="anchor"></a>AMR 1.2.0.9015<small> Unreleased </small>
|
||||
</h1>
|
||||
<div id="last-updated-25-jun-2020" class="section level2">
|
||||
<h2 class="hasAnchor">
|
||||
|
@ -285,8 +285,7 @@
|
|||
<li>Fixed a bug in <code><a href="../reference/bug_drug_combinations.html">bug_drug_combinations()</a></code> for when only one antibiotic was in the input data</li>
|
||||
<li>Changed the summary for class <code><mo></code>, to highlight the %SI vs. %R</li>
|
||||
<li>Improved error handling, giving more useful info when functions return an error</li>
|
||||
<li>Algorithm improvements to <code><a href="../reference/as.ab.html">as.ab()</a></code>
|
||||
</li>
|
||||
<li>Algorithm improvements to <code><a href="../reference/as.ab.html">as.ab()</a></code>, many more misspellings are now translatable</li>
|
||||
<li>Added Monuril as trade name for fosfomycin</li>
|
||||
</ul>
|
||||
</div>
|
||||
|
|
|
@ -10,7 +10,7 @@ articles:
|
|||
WHONET: WHONET.html
|
||||
benchmarks: benchmarks.html
|
||||
resistance_predict: resistance_predict.html
|
||||
last_built: 2020-06-25T15:34Z
|
||||
last_built: 2020-06-25T17:20Z
|
||||
urls:
|
||||
reference: https://msberends.gitlab.io/AMR/reference
|
||||
article: https://msberends.gitlab.io/AMR/articles
|
||||
|
|
|
@ -81,7 +81,7 @@
|
|||
</button>
|
||||
<span class="navbar-brand">
|
||||
<a class="navbar-link" href="../index.html">AMR (for R)</a>
|
||||
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9014</span>
|
||||
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9015</span>
|
||||
</span>
|
||||
</div>
|
||||
|
||||
|
@ -286,6 +286,12 @@
|
|||
<td><p>Apply EUCAST rules</p></td>
|
||||
</tr><tr>
|
||||
|
||||
<td>
|
||||
<p><code><a href="ab_from_text.html">ab_from_text()</a></code> </p>
|
||||
</td>
|
||||
<td><p>Retrieve antimicrobial drugs from text</p></td>
|
||||
</tr><tr>
|
||||
|
||||
<td>
|
||||
<p><code><a href="guess_ab_col.html">guess_ab_col()</a></code> </p>
|
||||
</td>
|
||||
|
|
Loading…
Reference in New Issue