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(v3.0.1.9079) docs: rename remaining 'antibiotic selectors'/'AB selectors' to 'antimicrobial selectors'/'AMR selectors'

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* docs: rename remaining 'antibiotic selectors'/'AB selectors' to 'antimicrobial selectors'/'AMR selectors'

Five leftover occurrences of the old terminology updated in the AMR
vignette (section heading + code comment), the amr_selectors test file,
and two roxygen example comments in amr_selectors.R. The auto-generated
man/antimicrobial_selectors.Rd will update on the next devtools::document() run.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_0169LucQ7SHDLHdTnDs1ENhd

* fix

---------

Co-authored-by: Claude <noreply@anthropic.com>
This commit is contained in:
Matthijs Berends
2026-06-27 14:31:58 +02:00
committed by GitHub
parent 12cabca29d
commit 03be4b87fc
10 changed files with 13 additions and 13 deletions
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tests/testthat/test-amr_selectors.R
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@@ -88,7 +88,7 @@ test_that("test-amr selectors.R", {
expect_equal(nrow(example_isolates[any(carbapenems() != "R"), ]), 910, tolerance = 0.5)
expect_equal(nrow(example_isolates[carbapenems() != "R", ]), 704, tolerance = 0.5)
# filter with multiple antibiotic selectors using c()
# filter with multiple antimicrobial selectors using c()
expect_equal(nrow(example_isolates[all(c(carbapenems(), aminoglycosides()) == "R"), ]), 26, tolerance = 0.5)
# filter + select in one go: get penicillins in carbapenems-resistant strains