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(v3.0.1.9079) docs: rename remaining 'antibiotic selectors'/'AB selectors' to 'antimicrobial selectors'/'AMR selectors'

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* docs: rename remaining 'antibiotic selectors'/'AB selectors' to 'antimicrobial selectors'/'AMR selectors'

Five leftover occurrences of the old terminology updated in the AMR
vignette (section heading + code comment), the amr_selectors test file,
and two roxygen example comments in amr_selectors.R. The auto-generated
man/antimicrobial_selectors.Rd will update on the next devtools::document() run.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_0169LucQ7SHDLHdTnDs1ENhd

* fix

---------

Co-authored-by: Claude <noreply@anthropic.com>
This commit is contained in:
Matthijs Berends
2026-06-27 14:31:58 +02:00
committed by GitHub
parent 12cabca29d
commit 03be4b87fc
10 changed files with 13 additions and 13 deletions
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6
vignettes/AMR.Rmd
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@@ -220,9 +220,9 @@ our_data_1st %>%
count(mo_name(bacteria), sort = TRUE)
```
## Select and filter with antibiotic selectors
## Select and filter with antimicrobial selectors
Using so-called antibiotic class selectors, you can select or filter columns based on the antibiotic class that your antibiotic results are in:
Using so-called antimicrobial class selectors, you can select or filter columns based on the antimicrobial class that your antimicrobial results are in:
```{r bug_drg 2a}
our_data_1st %>%
@@ -234,7 +234,7 @@ our_data_1st %>%
our_data_1st %>%
select(bacteria, where(is.sir))
# filtering using AB selectors is also possible:
# filtering using antimicrobial selectors is also possible:
our_data_1st %>%
filter(any(aminoglycosides() == "R"))