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resistance predict

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dr. M.S. (Matthijs) Berends
2019-01-15 12:45:24 +01:00
parent cda7087722
commit 046d195064
16 changed files with 306 additions and 209 deletions
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5
R/eucast_rules.R
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@ -231,9 +231,8 @@ eucast_rules <- function(tbl,
# try to find columns based on type
# -- mo
if (is.null(col_mo) & "mo" %in% lapply(tbl, class)) {
col_mo <- colnames(tbl)[lapply(tbl, class) == "mo"][1]
message(blue(paste0("NOTE: Using column `", bold(col_mo), "` as input for `col_mo`.")))
if (is.null(col_mo)) {
col_mo <- search_type_in_df(tbl = tbl, type = "mo")
}
if (is.null(col_mo)) {
stop("`col_mo` must be set.", call. = FALSE)