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@ -38,7 +38,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.0.0.9018</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.0.0.9019</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@ -47,13 +47,6 @@
<div id="navbar" class="collapse navbar-collapse ms-3">
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@ -101,11 +94,6 @@
Work with WHONET Data
</a>
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Import Data From SPSS/SAS/Stata
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@ -128,6 +116,35 @@
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AMR &amp; dplyr/tidyverse
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@ -142,6 +159,12 @@
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@ -149,12 +172,6 @@
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@ -385,19 +402,19 @@ names or codes, this would have worked exactly the same way:</p>
<div class="sourceCode" id="cb8"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/utils/head.html" class="external-link">head</a></span><span class="op">(</span><span class="va">my_TB_data</span><span class="op">)</span></span>
<span><span class="co">#&gt; rifampicin isoniazid gatifloxacin ethambutol pyrazinamide moxifloxacin</span></span>
<span><span class="co">#&gt; 1 R R S I I R</span></span>
<span><span class="co">#&gt; 2 S I R I R S</span></span>
<span><span class="co">#&gt; 3 R S S S R I</span></span>
<span><span class="co">#&gt; 4 S R S R R I</span></span>
<span><span class="co">#&gt; 5 R I S R R R</span></span>
<span><span class="co">#&gt; 6 R R I S I I</span></span>
<span><span class="co">#&gt; 1 S I S S I R</span></span>
<span><span class="co">#&gt; 2 R S S I I I</span></span>
<span><span class="co">#&gt; 3 R S S S S S</span></span>
<span><span class="co">#&gt; 4 R I I S S R</span></span>
<span><span class="co">#&gt; 5 R R R R I I</span></span>
<span><span class="co">#&gt; 6 S R S I R R</span></span>
<span><span class="co">#&gt; kanamycin</span></span>
<span><span class="co">#&gt; 1 I</span></span>
<span><span class="co">#&gt; 2 R</span></span>
<span><span class="co">#&gt; 1 S</span></span>
<span><span class="co">#&gt; 2 S</span></span>
<span><span class="co">#&gt; 3 S</span></span>
<span><span class="co">#&gt; 4 S</span></span>
<span><span class="co">#&gt; 5 S</span></span>
<span><span class="co">#&gt; 6 R</span></span></code></pre></div>
<span><span class="co">#&gt; 4 I</span></span>
<span><span class="co">#&gt; 5 R</span></span>
<span><span class="co">#&gt; 6 I</span></span></code></pre></div>
<p>We can now add the interpretation of MDR-TB to our data set. You can
use:</p>
<div class="sourceCode" id="cb9"><pre class="downlit sourceCode r">
@ -438,40 +455,40 @@ Unique: 5</p>
<tr class="odd">
<td align="left">1</td>
<td align="left">Mono-resistant</td>
<td align="right">3221</td>
<td align="right">64.42%</td>
<td align="right">3221</td>
<td align="right">64.42%</td>
<td align="right">3243</td>
<td align="right">64.86%</td>
<td align="right">3243</td>
<td align="right">64.86%</td>
</tr>
<tr class="even">
<td align="left">2</td>
<td align="left">Negative</td>
<td align="right">942</td>
<td align="right">18.84%</td>
<td align="right">4163</td>
<td align="right">83.26%</td>
<td align="right">971</td>
<td align="right">19.42%</td>
<td align="right">4214</td>
<td align="right">84.28%</td>
</tr>
<tr class="odd">
<td align="left">3</td>
<td align="left">Multi-drug-resistant</td>
<td align="right">465</td>
<td align="right">9.30%</td>
<td align="right">4628</td>
<td align="right">92.56%</td>
<td align="right">450</td>
<td align="right">9.00%</td>
<td align="right">4664</td>
<td align="right">93.28%</td>
</tr>
<tr class="even">
<td align="left">4</td>
<td align="left">Poly-resistant</td>
<td align="right">255</td>
<td align="right">5.10%</td>
<td align="right">4883</td>
<td align="right">97.66%</td>
<td align="right">230</td>
<td align="right">4.60%</td>
<td align="right">4894</td>
<td align="right">97.88%</td>
</tr>
<tr class="odd">
<td align="left">5</td>
<td align="left">Extensively drug-resistant</td>
<td align="right">117</td>
<td align="right">2.34%</td>
<td align="right">106</td>
<td align="right">2.12%</td>
<td align="right">5000</td>
<td align="right">100.00%</td>
</tr>