mirror of
https://github.com/msberends/AMR.git
synced 2025-09-02 19:44:04 +02:00
Built site for AMR: 2.0.0.9019@0bcf55d
This commit is contained in:
github-actions
@@ -10,7 +10,7 @@
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.0.0.9018</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.0.0.9019</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
@@ -18,14 +18,7 @@
|
||||
</button>
|
||||
|
||||
<div id="navbar" class="collapse navbar-collapse ms-3">
|
||||
<ul class="navbar-nav me-auto"><li class="nav-item">
|
||||
<a class="nav-link" href="../index.html">
|
||||
<span class="fa fa-home"></span>
|
||||
|
||||
Home
|
||||
</a>
|
||||
</li>
|
||||
<li class="nav-item dropdown">
|
||||
<ul class="navbar-nav me-auto"><li class="nav-item dropdown">
|
||||
<a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown--how-to">
|
||||
<span class="fa fa-question-circle"></span>
|
||||
|
||||
@@ -72,11 +65,6 @@
|
||||
|
||||
Work with WHONET Data
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/SPSS.html">
|
||||
<span class="fa fa-file-upload"></span>
|
||||
|
||||
Import Data From SPSS/SAS/Stata
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/EUCAST.html">
|
||||
<span class="fa fa-exchange-alt"></span>
|
||||
|
||||
@@ -99,6 +87,35 @@
|
||||
</a>
|
||||
</div>
|
||||
</li>
|
||||
<li class="nav-item dropdown">
|
||||
<a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown--with-other-pkgs">
|
||||
<span class="fa fa-circles-overlap"></span>
|
||||
|
||||
With other pkgs
|
||||
</a>
|
||||
<div class="dropdown-menu" aria-labelledby="dropdown--with-other-pkgs">
|
||||
<a class="dropdown-item" href="../articles/other_pkg.html">
|
||||
<span class="fa fa-circles-overlap"></span>
|
||||
|
||||
AMR & dplyr/tidyverse
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/other_pkg.html">
|
||||
<span class="fa fa-circles-overlap"></span>
|
||||
|
||||
AMR & data.table
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/other_pkg.html">
|
||||
<span class="fa fa-circles-overlap"></span>
|
||||
|
||||
AMR & tidymodels
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/other_pkg.html">
|
||||
<span class="fa fa-circles-overlap"></span>
|
||||
|
||||
AMR & base R
|
||||
</a>
|
||||
</div>
|
||||
</li>
|
||||
<li class="active nav-item">
|
||||
<a class="nav-link" href="../reference/index.html">
|
||||
<span class="fa fa-book-open"></span>
|
||||
@@ -113,17 +130,17 @@
|
||||
Authors
|
||||
</a>
|
||||
</li>
|
||||
<li class="nav-item">
|
||||
</ul><form class="form-inline my-2 my-lg-0" role="search">
|
||||
<input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off"></form>
|
||||
|
||||
<ul class="navbar-nav"><li class="nav-item">
|
||||
<a class="nav-link" href="../news/index.html">
|
||||
<span class="far fa far fa-newspaper"></span>
|
||||
|
||||
Changelog
|
||||
</a>
|
||||
</li>
|
||||
</ul><form class="form-inline my-2 my-lg-0" role="search">
|
||||
<input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off"></form>
|
||||
|
||||
<ul class="navbar-nav"><li class="nav-item">
|
||||
<li class="nav-item">
|
||||
<a class="external-link nav-link" href="https://github.com/msberends/AMR">
|
||||
<span class="fab fa fab fa-github"></span>
|
||||
|
||||
@@ -193,43 +210,43 @@
|
||||
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 32 0.125 0.002 0.0625 16 32 0.25 0.005 32 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [10] 32 0.025 0.025 0.01 16 0.25 32 0.005 8 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [19] >=128 0.002 0.01 0.002 8 <=0.001 0.01 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 64 8 4 0.01 0.25 <=0.001 2 0.5 0.125 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [10] 4 0.005 1 32 64 0.01 >=128 0.25 0.0625 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [19] 0.025 4 0.125 64 0.005 0.5 0.0625 </span>
|
||||
<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 39 44 20 34 35 49 41 9 45 26 38 38 43 44 43 27 44 29 42 27 11 46 7 43 46</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 41 41 50 42 9 18 6 13 38 13 35 13 26 24 22 49 42 10 49 49 35 24 42 41 41</span>
|
||||
<span class="r-in"><span><span class="fu">random_sir</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'sir'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] S I R S S R R I S R S S S R R I I I R S I R S I R</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] R S S R R R I S R S R R S S R R I I S R I I S R I</span>
|
||||
<span class="r-in"><span></span></span>
|
||||
<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
|
||||
<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
|
||||
<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 2 1 0.0625 0.01 1 0.25 0.125 0.005 0.125 >=64 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [11] 0.25 0.025 0.125 1 0.005 0.25 0.025 32 0.25 32 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [21] 32 0.0625 0.125 0.01 0.125 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] <=0.001 0.002 <=0.001 0.125 0.005 32 0.025 32 64 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [10] 0.0625 8 0.125 64 0.025 1 1 0.025 0.002 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [19] <=0.001 0.005 0.125 0.002 <=0.001 32 0.125 </span>
|
||||
<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 2 1 2 8 2 4 <=0.5 <=0.5 >=16 >=16 1 4 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [13] 4 4 >=16 1 4 <=0.5 4 2 1 2 1 2 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [25] 2 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] <=1 <=1 4 <=1 16 4 16 64 32 2 2 64 32 2 64 16 <=1 16 64 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [20] 4 2 4 4 8 2 </span>
|
||||
<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 1 0.25 1 <=0.025 2 2 0.125 0.5 1 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [10] 0.0625 <=0.025 1 0.5 0.125 >=4 >=4 0.25 0.125 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [19] 0.125 0.5 <=0.025 <=0.025 0.25 0.5 0.5 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 16 16 16 16 <=0.0625 8 8 4 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [9] 8 <=0.0625 1 0.5 2 0.5 8 8 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [17] 0.125 8 2 0.125 <=0.0625 0.125 0.25 2 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [25] 0.25 </span>
|
||||
<span class="r-in"><span></span></span>
|
||||
<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 14 34 36 16 21 47 29 46 32 45 27 45 25 37 42 36 34 30 49 28 22 45 46 41 34</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 40 32 46 40 24 29 50 24 47 40 31 11 48 41 38 9 48 42 39 14 9 48 39 29 24</span>
|
||||
<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 15 14 14 11 13 11 16 17 12 11 11 15 15 16 14 11 12 13 14 14 16 17 14 16 12</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 16 16 17 13 15 11 15 17 17 11 12 16 12 13 14 11 14 13 16 12 11 13 12 11 13</span>
|
||||
<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 27 19 26 21 24 27 23 22 19 25 23 27 25 25 21 20 20 27 21 19 26 22 26 27 24</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 18 16 21 23 18 19 27 19 27 16 23 15 16 27 17 15 26 21 27 20 24 26 24 24 19</span>
|
||||
<span class="r-in"><span><span class="co"># }</span></span></span>
|
||||
</code></pre></div>
|
||||
</div>
|
||||
|
||||
Reference in New Issue
Block a user