Built site for AMR: 1.8.2.9147@4416394
@ -10,7 +10,7 @@
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||||
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||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||
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||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9146</small>
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||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9147</small>
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@ -32,11 +32,6 @@
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How to
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||||
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|
||||
<div class="dropdown-menu" aria-labelledby="dropdown--how-to">
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
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|
||||
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||||
User- Or Team-specific Package Settings
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||||
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|
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<a class="dropdown-item" href="../articles/AMR.html">
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||||
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|
||||
|
||||
@ -55,7 +50,12 @@
|
||||
<a class="dropdown-item" href="../articles/datasets.html">
|
||||
<span class="fa fa-database"></span>
|
||||
|
||||
Data Sets for Download / Own Use
|
||||
Download Data Sets for Own Use
|
||||
</a>
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
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||||
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Set User- Or Team-specific Package Settings
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@ -10,7 +10,7 @@
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||||
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||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||
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||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9146</small>
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||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9147</small>
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@ -32,11 +32,6 @@
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How to
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||||
</a>
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||||
<div class="dropdown-menu" aria-labelledby="dropdown--how-to">
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
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<span class="fa fa-gear"></span>
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User- Or Team-specific Package Settings
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@ -55,7 +50,12 @@
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<a class="dropdown-item" href="../articles/datasets.html">
|
||||
<span class="fa fa-database"></span>
|
||||
|
||||
Data Sets for Download / Own Use
|
||||
Download Data Sets for Own Use
|
||||
</a>
|
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Set User- Or Team-specific Package Settings
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@ -18,7 +18,7 @@ The AMR package is available in English, Chinese, Danish, Dutch, French, German,
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9146</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9147</small>
|
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||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -40,11 +40,6 @@ The AMR package is available in English, Chinese, Danish, Dutch, French, German,
|
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How to
|
||||
</a>
|
||||
<div class="dropdown-menu" aria-labelledby="dropdown--how-to">
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/AMR.html">
|
||||
<span class="fa fa-directions"></span>
|
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|
||||
@ -63,7 +58,12 @@ The AMR package is available in English, Chinese, Danish, Dutch, French, German,
|
||||
<a class="dropdown-item" href="../articles/datasets.html">
|
||||
<span class="fa fa-database"></span>
|
||||
|
||||
Data Sets for Download / Own Use
|
||||
Download Data Sets for Own Use
|
||||
</a>
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
Set User- Or Team-specific Package Settings
|
||||
</a>
|
||||
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|
||||
<span class="fa fa-compress"></span>
|
||||
|
Before Width: | Height: | Size: 13 KiB After Width: | Height: | Size: 13 KiB |
Before Width: | Height: | Size: 13 KiB After Width: | Height: | Size: 13 KiB |
Before Width: | Height: | Size: 12 KiB After Width: | Height: | Size: 13 KiB |
Before Width: | Height: | Size: 18 KiB After Width: | Height: | Size: 18 KiB |
Before Width: | Height: | Size: 8.1 KiB After Width: | Height: | Size: 8.4 KiB |
@ -10,7 +10,7 @@
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9146</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9147</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
@ -32,11 +32,6 @@
|
||||
How to
|
||||
</a>
|
||||
<div class="dropdown-menu" aria-labelledby="dropdown--how-to">
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/AMR.html">
|
||||
<span class="fa fa-directions"></span>
|
||||
|
||||
@ -55,7 +50,12 @@
|
||||
<a class="dropdown-item" href="../articles/datasets.html">
|
||||
<span class="fa fa-database"></span>
|
||||
|
||||
Data Sets for Download / Own Use
|
||||
Download Data Sets for Own Use
|
||||
</a>
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
Set User- Or Team-specific Package Settings
|
||||
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|
||||
<a class="dropdown-item" href="../articles/PCA.html">
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||||
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|
||||
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@ -10,7 +10,7 @@
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9146</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9147</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
@ -32,11 +32,6 @@
|
||||
How to
|
||||
</a>
|
||||
<div class="dropdown-menu" aria-labelledby="dropdown--how-to">
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/AMR.html">
|
||||
<span class="fa fa-directions"></span>
|
||||
|
||||
@ -55,7 +50,12 @@
|
||||
<a class="dropdown-item" href="../articles/datasets.html">
|
||||
<span class="fa fa-database"></span>
|
||||
|
||||
Data Sets for Download / Own Use
|
||||
Download Data Sets for Own Use
|
||||
</a>
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
Set User- Or Team-specific Package Settings
|
||||
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|
||||
<a class="dropdown-item" href="../articles/PCA.html">
|
||||
<span class="fa fa-compress"></span>
|
||||
|
@ -10,7 +10,7 @@
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9146</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9147</small>
|
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||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
@ -32,11 +32,6 @@
|
||||
How to
|
||||
</a>
|
||||
<div class="dropdown-menu" aria-labelledby="dropdown--how-to">
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
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||||
User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/AMR.html">
|
||||
<span class="fa fa-directions"></span>
|
||||
|
||||
@ -55,7 +50,12 @@
|
||||
<a class="dropdown-item" href="../articles/datasets.html">
|
||||
<span class="fa fa-database"></span>
|
||||
|
||||
Data Sets for Download / Own Use
|
||||
Download Data Sets for Own Use
|
||||
</a>
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
Set User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/PCA.html">
|
||||
<span class="fa fa-compress"></span>
|
||||
|
@ -10,7 +10,7 @@
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9146</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9147</small>
|
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||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
@ -32,11 +32,6 @@
|
||||
How to
|
||||
</a>
|
||||
<div class="dropdown-menu" aria-labelledby="dropdown--how-to">
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/AMR.html">
|
||||
<span class="fa fa-directions"></span>
|
||||
|
||||
@ -55,7 +50,12 @@
|
||||
<a class="dropdown-item" href="../articles/datasets.html">
|
||||
<span class="fa fa-database"></span>
|
||||
|
||||
Data Sets for Download / Own Use
|
||||
Download Data Sets for Own Use
|
||||
</a>
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
Set User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/PCA.html">
|
||||
<span class="fa fa-compress"></span>
|
||||
|
@ -10,7 +10,7 @@
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9146</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9147</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
@ -32,11 +32,6 @@
|
||||
How to
|
||||
</a>
|
||||
<div class="dropdown-menu" aria-labelledby="dropdown--how-to">
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/AMR.html">
|
||||
<span class="fa fa-directions"></span>
|
||||
|
||||
@ -55,7 +50,12 @@
|
||||
<a class="dropdown-item" href="../articles/datasets.html">
|
||||
<span class="fa fa-database"></span>
|
||||
|
||||
Data Sets for Download / Own Use
|
||||
Download Data Sets for Own Use
|
||||
</a>
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
Set User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/PCA.html">
|
||||
<span class="fa fa-compress"></span>
|
||||
|
@ -10,7 +10,7 @@
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9146</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9147</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
@ -32,11 +32,6 @@
|
||||
How to
|
||||
</a>
|
||||
<div class="dropdown-menu" aria-labelledby="dropdown--how-to">
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/AMR.html">
|
||||
<span class="fa fa-directions"></span>
|
||||
|
||||
@ -55,7 +50,12 @@
|
||||
<a class="dropdown-item" href="../articles/datasets.html">
|
||||
<span class="fa fa-database"></span>
|
||||
|
||||
Data Sets for Download / Own Use
|
||||
Download Data Sets for Own Use
|
||||
</a>
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
Set User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/PCA.html">
|
||||
<span class="fa fa-compress"></span>
|
||||
|
@ -10,7 +10,7 @@
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9146</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9147</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
@ -32,11 +32,6 @@
|
||||
How to
|
||||
</a>
|
||||
<div class="dropdown-menu" aria-labelledby="dropdown--how-to">
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/AMR.html">
|
||||
<span class="fa fa-directions"></span>
|
||||
|
||||
@ -55,7 +50,12 @@
|
||||
<a class="dropdown-item" href="../articles/datasets.html">
|
||||
<span class="fa fa-database"></span>
|
||||
|
||||
Data Sets for Download / Own Use
|
||||
Download Data Sets for Own Use
|
||||
</a>
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
Set User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/PCA.html">
|
||||
<span class="fa fa-compress"></span>
|
||||
@ -205,16 +205,16 @@
|
||||
<span class="r-in"><span></span></span>
|
||||
<span class="r-in"><span><span class="va">df</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> birth_date age age_exact age_at_y2k</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1 1977-05-02 45 45.81644 22</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2 1988-09-17 34 34.43836 11</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 3 1942-02-25 80 80.99726 57</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 4 1991-02-14 32 32.02740 8</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 5 1985-03-09 37 37.96438 14</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 6 1980-07-27 42 42.58082 19</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 7 1942-06-08 80 80.71507 57</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 8 1954-12-30 68 68.15342 45</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 9 1972-06-30 50 50.65479 27</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 10 1935-07-18 87 87.60548 64</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1 1965-11-22 57 57.26301 34</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2 1939-05-10 83 83.80000 60</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 3 1953-04-28 69 69.83288 46</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 4 1995-12-18 27 27.19178 4</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 5 1936-12-23 86 86.17808 63</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 6 1954-04-26 68 68.83836 45</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 7 1982-12-19 40 40.18904 17</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 8 1963-07-20 59 59.60548 36</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 9 1981-07-23 41 41.59726 18</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 10 1937-01-13 86 86.12055 62</span>
|
||||
</code></pre></div>
|
||||
</div>
|
||||
</main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2>
|
||||
|
@ -10,7 +10,7 @@
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||||
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||||
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|
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|
||||
@ -55,7 +50,12 @@
|
||||
<a class="dropdown-item" href="../articles/datasets.html">
|
||||
<span class="fa fa-database"></span>
|
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|
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|
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|
||||
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Set User- Or Team-specific Package Settings
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|
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|
@ -10,7 +10,7 @@
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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
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|
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|
||||
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|
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@ -55,7 +50,12 @@
|
||||
<a class="dropdown-item" href="../articles/datasets.html">
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||||
<span class="fa fa-database"></span>
|
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|
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Set User- Or Team-specific Package Settings
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|
||||
|
@ -10,7 +10,7 @@
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9146</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9147</small>
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||||
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@ -32,11 +32,6 @@
|
||||
How to
|
||||
</a>
|
||||
<div class="dropdown-menu" aria-labelledby="dropdown--how-to">
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
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|
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|
||||
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|
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|
||||
@ -55,7 +50,12 @@
|
||||
<a class="dropdown-item" href="../articles/datasets.html">
|
||||
<span class="fa fa-database"></span>
|
||||
|
||||
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|
||||
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|
||||
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|
||||
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@ -10,7 +10,7 @@
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|
||||
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|
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||||
</a>
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||||
<div class="dropdown-menu" aria-labelledby="dropdown--how-to">
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
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@ -55,7 +50,12 @@
|
||||
<a class="dropdown-item" href="../articles/datasets.html">
|
||||
<span class="fa fa-database"></span>
|
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||||
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|
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||||
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||||
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Set User- Or Team-specific Package Settings
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|
||||
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|
||||
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|
||||
|
@ -10,7 +10,7 @@
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9146</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9147</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
@ -32,11 +32,6 @@
|
||||
How to
|
||||
</a>
|
||||
<div class="dropdown-menu" aria-labelledby="dropdown--how-to">
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/AMR.html">
|
||||
<span class="fa fa-directions"></span>
|
||||
|
||||
@ -55,7 +50,12 @@
|
||||
<a class="dropdown-item" href="../articles/datasets.html">
|
||||
<span class="fa fa-database"></span>
|
||||
|
||||
Data Sets for Download / Own Use
|
||||
Download Data Sets for Own Use
|
||||
</a>
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
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|
||||
Set User- Or Team-specific Package Settings
|
||||
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|
||||
<a class="dropdown-item" href="../articles/PCA.html">
|
||||
<span class="fa fa-compress"></span>
|
||||
|
@ -10,7 +10,7 @@
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9146</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9147</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
@ -32,11 +32,6 @@
|
||||
How to
|
||||
</a>
|
||||
<div class="dropdown-menu" aria-labelledby="dropdown--how-to">
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/AMR.html">
|
||||
<span class="fa fa-directions"></span>
|
||||
|
||||
@ -55,7 +50,12 @@
|
||||
<a class="dropdown-item" href="../articles/datasets.html">
|
||||
<span class="fa fa-database"></span>
|
||||
|
||||
Data Sets for Download / Own Use
|
||||
Download Data Sets for Own Use
|
||||
</a>
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
Set User- Or Team-specific Package Settings
|
||||
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|
||||
<a class="dropdown-item" href="../articles/PCA.html">
|
||||
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|
||||
|
@ -10,7 +10,7 @@
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9146</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9147</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
@ -32,11 +32,6 @@
|
||||
How to
|
||||
</a>
|
||||
<div class="dropdown-menu" aria-labelledby="dropdown--how-to">
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/AMR.html">
|
||||
<span class="fa fa-directions"></span>
|
||||
|
||||
@ -55,7 +50,12 @@
|
||||
<a class="dropdown-item" href="../articles/datasets.html">
|
||||
<span class="fa fa-database"></span>
|
||||
|
||||
Data Sets for Download / Own Use
|
||||
Download Data Sets for Own Use
|
||||
</a>
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
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Set User- Or Team-specific Package Settings
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|
@ -12,7 +12,7 @@ All breakpoints used for interpretation are publicly available in the clinical_b
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9146</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9147</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
@ -34,11 +34,6 @@ All breakpoints used for interpretation are publicly available in the clinical_b
|
||||
How to
|
||||
</a>
|
||||
<div class="dropdown-menu" aria-labelledby="dropdown--how-to">
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/AMR.html">
|
||||
<span class="fa fa-directions"></span>
|
||||
|
||||
@ -57,7 +52,12 @@ All breakpoints used for interpretation are publicly available in the clinical_b
|
||||
<a class="dropdown-item" href="../articles/datasets.html">
|
||||
<span class="fa fa-database"></span>
|
||||
|
||||
Data Sets for Download / Own Use
|
||||
Download Data Sets for Own Use
|
||||
</a>
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
Set User- Or Team-specific Package Settings
|
||||
</a>
|
||||
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|
||||
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|
||||
@ -534,16 +534,16 @@ A microorganism is categorised as "Resistant" when there is a high likelihood of
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># A tibble: 50 × 17</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> datetime index ab_input ab_guid…¹ mo_in…² mo_guideline guide…³</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494; font-style: italic;"><dttm></span> <span style="color: #949494; font-style: italic;"><int></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><ab></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><mo></span> <span style="color: #949494; font-style: italic;"><chr></span> </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 1</span> 2023-02-24 <span style="color: #949494;">18:59:29</span> 1 TOB TOB Escher… B_[ORD]_ENTRBCTR EUCAST…</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 2</span> 2023-02-24 <span style="color: #949494;">18:59:29</span> 1 GEN GEN Escher… B_[ORD]_ENTRBCTR EUCAST…</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 3</span> 2023-02-24 <span style="color: #949494;">18:59:28</span> 1 CIP CIP Escher… B_[ORD]_ENTRBCTR EUCAST…</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 4</span> 2023-02-24 <span style="color: #949494;">18:59:28</span> 1 AMP AMP Escher… B_[ORD]_ENTRBCTR EUCAST…</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 5</span> 2023-02-24 <span style="color: #949494;">18:59:23</span> 1 CIP CIP B_ESCH… B_[ORD]_ENTRBCTR EUCAST…</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 6</span> 2023-02-24 <span style="color: #949494;">18:59:23</span> 2 CIP CIP B_ESCH… B_[ORD]_ENTRBCTR EUCAST…</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 7</span> 2023-02-24 <span style="color: #949494;">18:59:23</span> 3 CIP CIP B_ESCH… B_[ORD]_ENTRBCTR EUCAST…</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 8</span> 2023-02-24 <span style="color: #949494;">18:59:23</span> 4 CIP CIP B_ESCH… B_[ORD]_ENTRBCTR EUCAST…</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 9</span> 2023-02-24 <span style="color: #949494;">18:59:23</span> 5 CIP CIP B_ESCH… B_[ORD]_ENTRBCTR EUCAST…</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">10</span> 2023-02-24 <span style="color: #949494;">18:59:23</span> 6 CIP CIP B_ESCH… B_[ORD]_ENTRBCTR EUCAST…</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 1</span> 2023-02-26 <span style="color: #949494;">20:31:28</span> 1 TOB TOB Escher… B_[ORD]_ENTRBCTR EUCAST…</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 2</span> 2023-02-26 <span style="color: #949494;">20:31:27</span> 1 GEN GEN Escher… B_[ORD]_ENTRBCTR EUCAST…</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 3</span> 2023-02-26 <span style="color: #949494;">20:31:27</span> 1 CIP CIP Escher… B_[ORD]_ENTRBCTR EUCAST…</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 4</span> 2023-02-26 <span style="color: #949494;">20:31:27</span> 1 AMP AMP Escher… B_[ORD]_ENTRBCTR EUCAST…</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 5</span> 2023-02-26 <span style="color: #949494;">20:31:22</span> 1 CIP CIP B_ESCH… B_[ORD]_ENTRBCTR EUCAST…</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 6</span> 2023-02-26 <span style="color: #949494;">20:31:22</span> 2 CIP CIP B_ESCH… B_[ORD]_ENTRBCTR EUCAST…</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 7</span> 2023-02-26 <span style="color: #949494;">20:31:22</span> 3 CIP CIP B_ESCH… B_[ORD]_ENTRBCTR EUCAST…</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 8</span> 2023-02-26 <span style="color: #949494;">20:31:22</span> 4 CIP CIP B_ESCH… B_[ORD]_ENTRBCTR EUCAST…</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 9</span> 2023-02-26 <span style="color: #949494;">20:31:22</span> 5 CIP CIP B_ESCH… B_[ORD]_ENTRBCTR EUCAST…</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">10</span> 2023-02-26 <span style="color: #949494;">20:31:22</span> 6 CIP CIP B_ESCH… B_[ORD]_ENTRBCTR EUCAST…</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># … with 40 more rows, 10 more variables: ref_table <chr>, method <chr>,</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># input <dbl>, outcome <sir>, breakpoint_S_R <chr>, ab_considered <lgl>,</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># mo_considered <lgl>, breakpoint_S <lgl>, breakpoint_R <lgl>,</span></span>
|
||||
|
@ -10,7 +10,7 @@
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9146</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9147</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
@ -32,11 +32,6 @@
|
||||
How to
|
||||
</a>
|
||||
<div class="dropdown-menu" aria-labelledby="dropdown--how-to">
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/AMR.html">
|
||||
<span class="fa fa-directions"></span>
|
||||
|
||||
@ -55,7 +50,12 @@
|
||||
<a class="dropdown-item" href="../articles/datasets.html">
|
||||
<span class="fa fa-database"></span>
|
||||
|
||||
Data Sets for Download / Own Use
|
||||
Download Data Sets for Own Use
|
||||
</a>
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
Set User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/PCA.html">
|
||||
<span class="fa fa-compress"></span>
|
||||
|
@ -10,7 +10,7 @@
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9146</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9147</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
@ -32,11 +32,6 @@
|
||||
How to
|
||||
</a>
|
||||
<div class="dropdown-menu" aria-labelledby="dropdown--how-to">
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/AMR.html">
|
||||
<span class="fa fa-directions"></span>
|
||||
|
||||
@ -55,7 +50,12 @@
|
||||
<a class="dropdown-item" href="../articles/datasets.html">
|
||||
<span class="fa fa-database"></span>
|
||||
|
||||
Data Sets for Download / Own Use
|
||||
Download Data Sets for Own Use
|
||||
</a>
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
Set User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/PCA.html">
|
||||
<span class="fa fa-compress"></span>
|
||||
|
@ -10,7 +10,7 @@
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9146</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9147</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
@ -32,11 +32,6 @@
|
||||
How to
|
||||
</a>
|
||||
<div class="dropdown-menu" aria-labelledby="dropdown--how-to">
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/AMR.html">
|
||||
<span class="fa fa-directions"></span>
|
||||
|
||||
@ -55,7 +50,12 @@
|
||||
<a class="dropdown-item" href="../articles/datasets.html">
|
||||
<span class="fa fa-database"></span>
|
||||
|
||||
Data Sets for Download / Own Use
|
||||
Download Data Sets for Own Use
|
||||
</a>
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
Set User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/PCA.html">
|
||||
<span class="fa fa-compress"></span>
|
||||
|
@ -10,7 +10,7 @@
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9146</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9147</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
@ -32,11 +32,6 @@
|
||||
How to
|
||||
</a>
|
||||
<div class="dropdown-menu" aria-labelledby="dropdown--how-to">
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/AMR.html">
|
||||
<span class="fa fa-directions"></span>
|
||||
|
||||
@ -55,7 +50,12 @@
|
||||
<a class="dropdown-item" href="../articles/datasets.html">
|
||||
<span class="fa fa-database"></span>
|
||||
|
||||
Data Sets for Download / Own Use
|
||||
Download Data Sets for Own Use
|
||||
</a>
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
Set User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/PCA.html">
|
||||
<span class="fa fa-compress"></span>
|
||||
|
@ -10,7 +10,7 @@
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9146</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9147</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
@ -32,11 +32,6 @@
|
||||
How to
|
||||
</a>
|
||||
<div class="dropdown-menu" aria-labelledby="dropdown--how-to">
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/AMR.html">
|
||||
<span class="fa fa-directions"></span>
|
||||
|
||||
@ -55,7 +50,12 @@
|
||||
<a class="dropdown-item" href="../articles/datasets.html">
|
||||
<span class="fa fa-database"></span>
|
||||
|
||||
Data Sets for Download / Own Use
|
||||
Download Data Sets for Own Use
|
||||
</a>
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
Set User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/PCA.html">
|
||||
<span class="fa fa-compress"></span>
|
||||
|
@ -10,7 +10,7 @@
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9146</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9147</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
@ -32,11 +32,6 @@
|
||||
How to
|
||||
</a>
|
||||
<div class="dropdown-menu" aria-labelledby="dropdown--how-to">
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/AMR.html">
|
||||
<span class="fa fa-directions"></span>
|
||||
|
||||
@ -55,7 +50,12 @@
|
||||
<a class="dropdown-item" href="../articles/datasets.html">
|
||||
<span class="fa fa-database"></span>
|
||||
|
||||
Data Sets for Download / Own Use
|
||||
Download Data Sets for Own Use
|
||||
</a>
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
Set User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/PCA.html">
|
||||
<span class="fa fa-compress"></span>
|
||||
|
@ -12,7 +12,7 @@ count_resistant() should be used to count resistant isolates, count_susceptible(
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9146</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9147</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
@ -34,11 +34,6 @@ count_resistant() should be used to count resistant isolates, count_susceptible(
|
||||
How to
|
||||
</a>
|
||||
<div class="dropdown-menu" aria-labelledby="dropdown--how-to">
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/AMR.html">
|
||||
<span class="fa fa-directions"></span>
|
||||
|
||||
@ -57,7 +52,12 @@ count_resistant() should be used to count resistant isolates, count_susceptible(
|
||||
<a class="dropdown-item" href="../articles/datasets.html">
|
||||
<span class="fa fa-database"></span>
|
||||
|
||||
Data Sets for Download / Own Use
|
||||
Download Data Sets for Own Use
|
||||
</a>
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
Set User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/PCA.html">
|
||||
<span class="fa fa-compress"></span>
|
||||
|
@ -10,7 +10,7 @@
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9146</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9147</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
@ -32,11 +32,6 @@
|
||||
How to
|
||||
</a>
|
||||
<div class="dropdown-menu" aria-labelledby="dropdown--how-to">
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/AMR.html">
|
||||
<span class="fa fa-directions"></span>
|
||||
|
||||
@ -55,7 +50,12 @@
|
||||
<a class="dropdown-item" href="../articles/datasets.html">
|
||||
<span class="fa fa-database"></span>
|
||||
|
||||
Data Sets for Download / Own Use
|
||||
Download Data Sets for Own Use
|
||||
</a>
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
Set User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/PCA.html">
|
||||
<span class="fa fa-compress"></span>
|
||||
|
@ -10,7 +10,7 @@
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9146</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9147</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
@ -32,11 +32,6 @@
|
||||
How to
|
||||
</a>
|
||||
<div class="dropdown-menu" aria-labelledby="dropdown--how-to">
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/AMR.html">
|
||||
<span class="fa fa-directions"></span>
|
||||
|
||||
@ -55,7 +50,12 @@
|
||||
<a class="dropdown-item" href="../articles/datasets.html">
|
||||
<span class="fa fa-database"></span>
|
||||
|
||||
Data Sets for Download / Own Use
|
||||
Download Data Sets for Own Use
|
||||
</a>
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
Set User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/PCA.html">
|
||||
<span class="fa fa-compress"></span>
|
||||
|
@ -12,7 +12,7 @@ To improve the interpretation of the antibiogram before EUCAST rules are applied
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9146</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9147</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
@ -34,11 +34,6 @@ To improve the interpretation of the antibiogram before EUCAST rules are applied
|
||||
How to
|
||||
</a>
|
||||
<div class="dropdown-menu" aria-labelledby="dropdown--how-to">
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/AMR.html">
|
||||
<span class="fa fa-directions"></span>
|
||||
|
||||
@ -57,7 +52,12 @@ To improve the interpretation of the antibiogram before EUCAST rules are applied
|
||||
<a class="dropdown-item" href="../articles/datasets.html">
|
||||
<span class="fa fa-database"></span>
|
||||
|
||||
Data Sets for Download / Own Use
|
||||
Download Data Sets for Own Use
|
||||
</a>
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
Set User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/PCA.html">
|
||||
<span class="fa fa-compress"></span>
|
||||
|
@ -10,7 +10,7 @@
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9146</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9147</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
@ -32,11 +32,6 @@
|
||||
How to
|
||||
</a>
|
||||
<div class="dropdown-menu" aria-labelledby="dropdown--how-to">
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/AMR.html">
|
||||
<span class="fa fa-directions"></span>
|
||||
|
||||
@ -55,7 +50,12 @@
|
||||
<a class="dropdown-item" href="../articles/datasets.html">
|
||||
<span class="fa fa-database"></span>
|
||||
|
||||
Data Sets for Download / Own Use
|
||||
Download Data Sets for Own Use
|
||||
</a>
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
Set User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/PCA.html">
|
||||
<span class="fa fa-compress"></span>
|
||||
|
@ -10,7 +10,7 @@
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9146</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9147</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
@ -32,11 +32,6 @@
|
||||
How to
|
||||
</a>
|
||||
<div class="dropdown-menu" aria-labelledby="dropdown--how-to">
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/AMR.html">
|
||||
<span class="fa fa-directions"></span>
|
||||
|
||||
@ -55,7 +50,12 @@
|
||||
<a class="dropdown-item" href="../articles/datasets.html">
|
||||
<span class="fa fa-database"></span>
|
||||
|
||||
Data Sets for Download / Own Use
|
||||
Download Data Sets for Own Use
|
||||
</a>
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
Set User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/PCA.html">
|
||||
<span class="fa fa-compress"></span>
|
||||
|
@ -12,7 +12,7 @@
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9146</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9147</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
@ -34,11 +34,6 @@
|
||||
How to
|
||||
</a>
|
||||
<div class="dropdown-menu" aria-labelledby="dropdown--how-to">
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/AMR.html">
|
||||
<span class="fa fa-directions"></span>
|
||||
|
||||
@ -57,7 +52,12 @@
|
||||
<a class="dropdown-item" href="../articles/datasets.html">
|
||||
<span class="fa fa-database"></span>
|
||||
|
||||
Data Sets for Download / Own Use
|
||||
Download Data Sets for Own Use
|
||||
</a>
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
Set User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/PCA.html">
|
||||
<span class="fa fa-compress"></span>
|
||||
|
@ -10,7 +10,7 @@
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9146</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9147</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
@ -32,11 +32,6 @@
|
||||
How to
|
||||
</a>
|
||||
<div class="dropdown-menu" aria-labelledby="dropdown--how-to">
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/AMR.html">
|
||||
<span class="fa fa-directions"></span>
|
||||
|
||||
@ -55,7 +50,12 @@
|
||||
<a class="dropdown-item" href="../articles/datasets.html">
|
||||
<span class="fa fa-database"></span>
|
||||
|
||||
Data Sets for Download / Own Use
|
||||
Download Data Sets for Own Use
|
||||
</a>
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
Set User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/PCA.html">
|
||||
<span class="fa fa-compress"></span>
|
||||
|
@ -10,7 +10,7 @@
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9146</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9147</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
@ -32,11 +32,6 @@
|
||||
How to
|
||||
</a>
|
||||
<div class="dropdown-menu" aria-labelledby="dropdown--how-to">
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/AMR.html">
|
||||
<span class="fa fa-directions"></span>
|
||||
|
||||
@ -55,7 +50,12 @@
|
||||
<a class="dropdown-item" href="../articles/datasets.html">
|
||||
<span class="fa fa-database"></span>
|
||||
|
||||
Data Sets for Download / Own Use
|
||||
Download Data Sets for Own Use
|
||||
</a>
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
Set User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/PCA.html">
|
||||
<span class="fa fa-compress"></span>
|
||||
@ -246,29 +246,27 @@
|
||||
<span class="r-in"><span><span class="va">df</span> <span class="op"><-</span> <span class="va">example_isolates</span><span class="op">[</span><span class="fu"><a href="https://rdrr.io/r/base/sample.html" class="external-link">sample</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/seq.html" class="external-link">seq_len</a></span><span class="op">(</span><span class="fl">2000</span><span class="op">)</span>, size <span class="op">=</span> <span class="fl">100</span><span class="op">)</span>, <span class="op">]</span></span></span>
|
||||
<span class="r-in"><span></span></span>
|
||||
<span class="r-in"><span><span class="fu">get_episode</span><span class="op">(</span><span class="va">df</span><span class="op">$</span><span class="va">date</span>, episode_days <span class="op">=</span> <span class="fl">60</span><span class="op">)</span> <span class="co"># indices</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 11 38 25 37 31 42 44 9 13 8 9 7 48 47 3 6 46 41 11 16 43 9 41 29 44</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [26] 42 30 28 36 1 30 39 40 32 35 6 3 27 24 1 2 35 17 20 9 36 34 48 23 22</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [51] 7 21 12 43 21 17 50 31 48 26 5 26 14 15 10 2 35 36 47 8 46 16 27 13 45</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [76] 40 28 25 21 4 50 36 45 17 24 6 18 6 3 5 46 19 4 37 49 48 13 33 10 41</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 13 31 23 24 16 19 43 25 28 28 46 31 8 41 30 34 11 18 39 14 4 22 27 10 49</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [26] 22 28 19 34 15 5 36 40 3 21 38 8 43 36 40 37 23 6 20 47 1 25 11 29 45</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [51] 5 45 6 1 32 40 7 45 2 46 35 34 6 41 41 2 12 26 48 17 15 20 24 12 31</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [76] 18 29 28 26 48 41 5 46 43 34 9 6 14 6 20 15 26 5 33 42 46 45 6 44 23</span>
|
||||
<span class="r-in"><span><span class="fu">is_new_episode</span><span class="op">(</span><span class="va">df</span><span class="op">$</span><span class="va">date</span>, episode_days <span class="op">=</span> <span class="fl">60</span><span class="op">)</span> <span class="co"># TRUE/FALSE</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE FALSE TRUE</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [13] TRUE TRUE TRUE TRUE TRUE TRUE FALSE TRUE TRUE FALSE FALSE TRUE</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [25] FALSE FALSE TRUE TRUE TRUE TRUE FALSE TRUE TRUE TRUE TRUE FALSE</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [37] FALSE TRUE TRUE FALSE TRUE FALSE TRUE TRUE FALSE FALSE TRUE FALSE</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [49] TRUE TRUE FALSE TRUE TRUE FALSE FALSE FALSE TRUE FALSE FALSE TRUE</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [61] TRUE FALSE TRUE TRUE TRUE FALSE FALSE FALSE FALSE FALSE FALSE FALSE</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [73] FALSE FALSE TRUE FALSE FALSE FALSE FALSE TRUE FALSE FALSE FALSE FALSE</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [85] FALSE FALSE TRUE FALSE FALSE FALSE FALSE TRUE FALSE FALSE TRUE FALSE</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [97] FALSE TRUE FALSE FALSE</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE FALSE TRUE FALSE</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [13] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [25] TRUE FALSE FALSE FALSE FALSE TRUE TRUE TRUE TRUE TRUE TRUE TRUE</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [37] FALSE FALSE FALSE FALSE TRUE FALSE TRUE TRUE TRUE TRUE FALSE FALSE</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [49] TRUE TRUE FALSE FALSE FALSE FALSE TRUE FALSE TRUE FALSE TRUE FALSE</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [61] TRUE FALSE FALSE FALSE FALSE FALSE TRUE TRUE TRUE TRUE FALSE FALSE</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [73] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [85] FALSE TRUE FALSE FALSE FALSE FALSE FALSE FALSE FALSE TRUE TRUE FALSE</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [97] FALSE FALSE TRUE FALSE</span>
|
||||
<span class="r-in"><span></span></span>
|
||||
<span class="r-in"><span><span class="co"># filter on results from the third 60-day episode only, using base R</span></span></span>
|
||||
<span class="r-in"><span><span class="va">df</span><span class="op">[</span><span class="fu"><a href="https://rdrr.io/r/base/which.html" class="external-link">which</a></span><span class="op">(</span><span class="fu">get_episode</span><span class="op">(</span><span class="va">df</span><span class="op">$</span><span class="va">date</span>, <span class="fl">60</span><span class="op">)</span> <span class="op">==</span> <span class="fl">3</span><span class="op">)</span>, <span class="op">]</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># A tibble: 3 × 46</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> date patient age gender ward mo PEN OXA FLC AMX </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494; font-style: italic;"><date></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><dbl></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><mo></span> <span style="color: #949494; font-style: italic;"><sir></span> <span style="color: #949494; font-style: italic;"><sir></span> <span style="color: #949494; font-style: italic;"><sir></span> <span style="color: #949494; font-style: italic;"><sir></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">1</span> 2002-10-22 718963 82 M ICU B_STPHY_EPDR R NA R R </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">2</span> 2002-10-20 F35553 51 M ICU B_STPHY_AURS S NA S NA </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">3</span> 2002-09-08 B8CB09 60 F Outpatie… B_STPHY_CONS S NA S NA </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># A tibble: 1 × 46</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> date patient age gender ward mo PEN OXA FLC AMX </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494; font-style: italic;"><date></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><dbl></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><mo></span> <span style="color: #949494; font-style: italic;"><sir></span> <span style="color: #949494; font-style: italic;"><sir></span> <span style="color: #949494; font-style: italic;"><sir></span> <span style="color: #949494; font-style: italic;"><sir></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">1</span> 2002-07-30 218912 76 F ICU B_ESCHR_COLI R NA NA NA </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># … with 36 more variables: AMC <sir>, AMP <sir>, TZP <sir>, CZO <sir>,</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># FEP <sir>, CXM <sir>, FOX <sir>, CTX <sir>, CAZ <sir>, CRO <sir>,</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># GEN <sir>, TOB <sir>, AMK <sir>, KAN <sir>, TMP <sir>, SXT <sir>,</span></span>
|
||||
@ -306,16 +304,16 @@
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># Groups: patient, condition [98]</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> patient date condition new_episode</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><date></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><lgl></span> </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 1</span> 032343 2003-06-09 B TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 2</span> 059414 2006-07-21 A TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 3</span> 063988 2006-12-26 A TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 4</span> 065133 2011-12-19 C TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 5</span> 067927 2002-02-05 A TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 6</span> 069276 2015-06-18 B TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 7</span> 083080 2012-04-16 B TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 8</span> 092034 2016-08-07 B TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 9</span> 097186 2015-10-28 B TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">10</span> 125492 2017-09-15 B TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 1</span> 001213 2009-08-03 A TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 2</span> 001213 2009-08-03 B TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 3</span> 005088 2017-09-28 A TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 4</span> 010257 2004-04-03 A TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 5</span> 035268 2011-05-31 C TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 6</span> 065187 2003-05-26 B TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 7</span> 080086 2010-08-08 A TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 8</span> 083080 2012-04-16 A TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 9</span> 092034 2006-06-12 B TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">10</span> 0E2483 2007-08-10 C TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># … with 90 more rows</span></span>
|
||||
<span class="r-in"><span></span></span>
|
||||
<span class="r-in"><span><span class="kw">if</span> <span class="op">(</span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">require</a></span><span class="op">(</span><span class="st"><a href="https://dplyr.tidyverse.org" class="external-link">"dplyr"</a></span><span class="op">)</span><span class="op">)</span> <span class="op">{</span></span></span>
|
||||
@ -329,19 +327,19 @@
|
||||
<span class="r-in"><span> <span class="fu"><a href="https://dplyr.tidyverse.org/reference/arrange.html" class="external-link">arrange</a></span><span class="op">(</span><span class="va">patient</span>, <span class="va">ward</span>, <span class="va">date</span><span class="op">)</span></span></span>
|
||||
<span class="r-in"><span><span class="op">}</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># A tibble: 100 × 5</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># Groups: ward, patient [92]</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># Groups: ward, patient [97]</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> ward date patient new_index new_logical</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><date></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><int></span> <span style="color: #949494; font-style: italic;"><lgl></span> </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 1</span> Clinical 2003-06-09 032343 1 TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 2</span> Clinical 2006-07-21 059414 1 TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 3</span> Clinical 2006-12-26 063988 1 TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 4</span> Clinical 2011-12-19 065133 1 TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 5</span> ICU 2002-02-05 067927 1 TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 6</span> ICU 2015-06-18 069276 1 TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 7</span> Clinical 2012-04-16 083080 1 TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 8</span> Clinical 2016-08-07 092034 1 TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 9</span> Clinical 2015-10-28 097186 1 TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">10</span> Clinical 2017-09-15 125492 1 TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 1</span> Clinical 2009-08-03 001213 1 TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 2</span> Clinical 2009-08-03 001213 1 FALSE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 3</span> Clinical 2017-09-28 005088 1 TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 4</span> Clinical 2004-04-03 010257 1 TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 5</span> ICU 2011-05-31 035268 1 TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 6</span> ICU 2003-05-26 065187 1 TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 7</span> Clinical 2010-08-08 080086 1 TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 8</span> Clinical 2012-04-16 083080 1 TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 9</span> ICU 2006-06-12 092034 1 TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">10</span> ICU 2007-08-10 0E2483 1 TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># … with 90 more rows</span></span>
|
||||
<span class="r-in"><span></span></span>
|
||||
<span class="r-in"><span><span class="kw">if</span> <span class="op">(</span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">require</a></span><span class="op">(</span><span class="st"><a href="https://dplyr.tidyverse.org" class="external-link">"dplyr"</a></span><span class="op">)</span><span class="op">)</span> <span class="op">{</span></span></span>
|
||||
@ -357,9 +355,9 @@
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># A tibble: 3 × 5</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> ward n_patients n_episodes_365 n_episodes_60 n_episodes_30</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><int></span> <span style="color: #949494; font-style: italic;"><int></span> <span style="color: #949494; font-style: italic;"><int></span> <span style="color: #949494; font-style: italic;"><int></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">1</span> Clinical 64 15 44 52</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">2</span> ICU 21 9 20 20</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">3</span> Outpatient 7 6 7 7</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">1</span> Clinical 65 13 38 48</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">2</span> ICU 30 10 22 25</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">3</span> Outpatient 2 2 2 2</span>
|
||||
<span class="r-in"><span></span></span>
|
||||
<span class="r-in"><span><span class="co"># grouping on patients and microorganisms leads to the same</span></span></span>
|
||||
<span class="r-in"><span><span class="co"># results as first_isolate() when using 'episode-based':</span></span></span>
|
||||
@ -388,19 +386,19 @@
|
||||
<span class="r-in"><span> <span class="fu"><a href="https://dplyr.tidyverse.org/reference/select.html" class="external-link">select</a></span><span class="op">(</span><span class="fu"><a href="https://dplyr.tidyverse.org/reference/group_data.html" class="external-link">group_vars</a></span><span class="op">(</span><span class="va">.</span><span class="op">)</span>, <span class="va">flag_episode</span><span class="op">)</span></span></span>
|
||||
<span class="r-in"><span><span class="op">}</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># A tibble: 100 × 4</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># Groups: patient, mo, ward [95]</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> patient mo ward flag_episode</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><mo></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><lgl></span> </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 1</span> 219024 B_ESCHR_COLI Clinical TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 2</span> 960698 B_ESCHR_COLI Clinical TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 3</span> 696587 B_BCTRD_FRGL Clinical TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 4</span> 850429 B_STPHY_EPDR Clinical TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 5</span> 8CBCF2 B_STPHY_CONS Clinical TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 6</span> 559068 B_STPHY_CPTS Clinical TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 7</span> E52521 B_KLBSL_AERG Clinical TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 8</span> 304508 B_STRPT_PNMN Clinical TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 9</span> 990867 B_STPHY_AURS Clinical TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">10</span> 2F0932 B_STPHY_CONS Clinical TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># Groups: patient, mo, ward [98]</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> patient mo ward flag_episode</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><mo></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><lgl></span> </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 1</span> F32657 B_CRYNB ICU TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 2</span> A66134 B_STPHY_AURS Clinical TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 3</span> 001213 B_PSDMN_AERG Clinical TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 4</span> 126334 B_STPHY_CONS Outpatient TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 5</span> 34B622 B_KLBSL_OXYT Clinical TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 6</span> 945BD5 B_ENTRBC_CLOC Clinical TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 7</span> 5C1947 B_ESCHR_COLI Clinical TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 8</span> 284FFF B_STPHY_EPDR Clinical TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 9</span> 662978 B_ESCHR_COLI Clinical TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">10</span> 874171 B_ESCHR_COLI Clinical TRUE </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># … with 90 more rows</span></span>
|
||||
<span class="r-in"><span><span class="co"># }</span></span></span>
|
||||
</code></pre></div>
|
||||
|
@ -10,7 +10,7 @@
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9146</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9147</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
@ -32,11 +32,6 @@
|
||||
How to
|
||||
</a>
|
||||
<div class="dropdown-menu" aria-labelledby="dropdown--how-to">
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/AMR.html">
|
||||
<span class="fa fa-directions"></span>
|
||||
|
||||
@ -55,7 +50,12 @@
|
||||
<a class="dropdown-item" href="../articles/datasets.html">
|
||||
<span class="fa fa-database"></span>
|
||||
|
||||
Data Sets for Download / Own Use
|
||||
Download Data Sets for Own Use
|
||||
</a>
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
Set User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/PCA.html">
|
||||
<span class="fa fa-compress"></span>
|
||||
|
@ -10,7 +10,7 @@
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9146</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9147</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
@ -32,11 +32,6 @@
|
||||
How to
|
||||
</a>
|
||||
<div class="dropdown-menu" aria-labelledby="dropdown--how-to">
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/AMR.html">
|
||||
<span class="fa fa-directions"></span>
|
||||
|
||||
@ -55,7 +50,12 @@
|
||||
<a class="dropdown-item" href="../articles/datasets.html">
|
||||
<span class="fa fa-database"></span>
|
||||
|
||||
Data Sets for Download / Own Use
|
||||
Download Data Sets for Own Use
|
||||
</a>
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
Set User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/PCA.html">
|
||||
<span class="fa fa-compress"></span>
|
||||
|
@ -10,7 +10,7 @@
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9146</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9147</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
@ -32,11 +32,6 @@
|
||||
How to
|
||||
</a>
|
||||
<div class="dropdown-menu" aria-labelledby="dropdown--how-to">
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/AMR.html">
|
||||
<span class="fa fa-directions"></span>
|
||||
|
||||
@ -55,7 +50,12 @@
|
||||
<a class="dropdown-item" href="../articles/datasets.html">
|
||||
<span class="fa fa-database"></span>
|
||||
|
||||
Data Sets for Download / Own Use
|
||||
Download Data Sets for Own Use
|
||||
</a>
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
Set User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/PCA.html">
|
||||
<span class="fa fa-compress"></span>
|
||||
|
@ -10,7 +10,7 @@
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9146</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9147</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
@ -32,11 +32,6 @@
|
||||
How to
|
||||
</a>
|
||||
<div class="dropdown-menu" aria-labelledby="dropdown--how-to">
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/AMR.html">
|
||||
<span class="fa fa-directions"></span>
|
||||
|
||||
@ -55,7 +50,12 @@
|
||||
<a class="dropdown-item" href="../articles/datasets.html">
|
||||
<span class="fa fa-database"></span>
|
||||
|
||||
Data Sets for Download / Own Use
|
||||
Download Data Sets for Own Use
|
||||
</a>
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
Set User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/PCA.html">
|
||||
<span class="fa fa-compress"></span>
|
||||
|
@ -10,7 +10,7 @@
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9146</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9147</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
@ -32,11 +32,6 @@
|
||||
How to
|
||||
</a>
|
||||
<div class="dropdown-menu" aria-labelledby="dropdown--how-to">
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/AMR.html">
|
||||
<span class="fa fa-directions"></span>
|
||||
|
||||
@ -55,7 +50,12 @@
|
||||
<a class="dropdown-item" href="../articles/datasets.html">
|
||||
<span class="fa fa-database"></span>
|
||||
|
||||
Data Sets for Download / Own Use
|
||||
Download Data Sets for Own Use
|
||||
</a>
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
Set User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/PCA.html">
|
||||
<span class="fa fa-compress"></span>
|
||||
|
@ -10,7 +10,7 @@
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9146</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9147</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
@ -32,11 +32,6 @@
|
||||
How to
|
||||
</a>
|
||||
<div class="dropdown-menu" aria-labelledby="dropdown--how-to">
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/AMR.html">
|
||||
<span class="fa fa-directions"></span>
|
||||
|
||||
@ -55,7 +50,12 @@
|
||||
<a class="dropdown-item" href="../articles/datasets.html">
|
||||
<span class="fa fa-database"></span>
|
||||
|
||||
Data Sets for Download / Own Use
|
||||
Download Data Sets for Own Use
|
||||
</a>
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
Set User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/PCA.html">
|
||||
<span class="fa fa-compress"></span>
|
||||
|
@ -10,7 +10,7 @@
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9146</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9147</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
@ -32,11 +32,6 @@
|
||||
How to
|
||||
</a>
|
||||
<div class="dropdown-menu" aria-labelledby="dropdown--how-to">
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/AMR.html">
|
||||
<span class="fa fa-directions"></span>
|
||||
|
||||
@ -55,7 +50,12 @@
|
||||
<a class="dropdown-item" href="../articles/datasets.html">
|
||||
<span class="fa fa-database"></span>
|
||||
|
||||
Data Sets for Download / Own Use
|
||||
Download Data Sets for Own Use
|
||||
</a>
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
Set User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/PCA.html">
|
||||
<span class="fa fa-compress"></span>
|
||||
|
@ -10,7 +10,7 @@
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9146</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9147</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
@ -32,11 +32,6 @@
|
||||
How to
|
||||
</a>
|
||||
<div class="dropdown-menu" aria-labelledby="dropdown--how-to">
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/AMR.html">
|
||||
<span class="fa fa-directions"></span>
|
||||
|
||||
@ -55,7 +50,12 @@
|
||||
<a class="dropdown-item" href="../articles/datasets.html">
|
||||
<span class="fa fa-database"></span>
|
||||
|
||||
Data Sets for Download / Own Use
|
||||
Download Data Sets for Own Use
|
||||
</a>
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
Set User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/PCA.html">
|
||||
<span class="fa fa-compress"></span>
|
||||
|
@ -10,7 +10,7 @@
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9146</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9147</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
@ -32,11 +32,6 @@
|
||||
How to
|
||||
</a>
|
||||
<div class="dropdown-menu" aria-labelledby="dropdown--how-to">
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/AMR.html">
|
||||
<span class="fa fa-directions"></span>
|
||||
|
||||
@ -55,7 +50,12 @@
|
||||
<a class="dropdown-item" href="../articles/datasets.html">
|
||||
<span class="fa fa-database"></span>
|
||||
|
||||
Data Sets for Download / Own Use
|
||||
Download Data Sets for Own Use
|
||||
</a>
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
Set User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/PCA.html">
|
||||
<span class="fa fa-compress"></span>
|
||||
@ -182,9 +182,9 @@
|
||||
<div class="section level2">
|
||||
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">kurtosis</span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/stats/Normal.html" class="external-link">rnorm</a></span><span class="op">(</span><span class="fl">10000</span><span class="op">)</span><span class="op">)</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 2.980001</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 3.037125</span>
|
||||
<span class="r-in"><span><span class="fu">kurtosis</span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/stats/Normal.html" class="external-link">rnorm</a></span><span class="op">(</span><span class="fl">10000</span><span class="op">)</span>, excess <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] -0.02531765</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 0.04694336</span>
|
||||
</code></pre></div>
|
||||
</div>
|
||||
</main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2>
|
||||
|
@ -10,7 +10,7 @@
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9146</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9147</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
@ -32,11 +32,6 @@
|
||||
How to
|
||||
</a>
|
||||
<div class="dropdown-menu" aria-labelledby="dropdown--how-to">
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/AMR.html">
|
||||
<span class="fa fa-directions"></span>
|
||||
|
||||
@ -55,7 +50,12 @@
|
||||
<a class="dropdown-item" href="../articles/datasets.html">
|
||||
<span class="fa fa-database"></span>
|
||||
|
||||
Data Sets for Download / Own Use
|
||||
Download Data Sets for Own Use
|
||||
</a>
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
Set User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/PCA.html">
|
||||
<span class="fa fa-compress"></span>
|
||||
|
@ -10,7 +10,7 @@
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9146</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9147</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
@ -32,11 +32,6 @@
|
||||
How to
|
||||
</a>
|
||||
<div class="dropdown-menu" aria-labelledby="dropdown--how-to">
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/AMR.html">
|
||||
<span class="fa fa-directions"></span>
|
||||
|
||||
@ -55,7 +50,12 @@
|
||||
<a class="dropdown-item" href="../articles/datasets.html">
|
||||
<span class="fa fa-database"></span>
|
||||
|
||||
Data Sets for Download / Own Use
|
||||
Download Data Sets for Own Use
|
||||
</a>
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
Set User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/PCA.html">
|
||||
<span class="fa fa-compress"></span>
|
||||
|
@ -10,7 +10,7 @@
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9146</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9147</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
@ -32,11 +32,6 @@
|
||||
How to
|
||||
</a>
|
||||
<div class="dropdown-menu" aria-labelledby="dropdown--how-to">
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/AMR.html">
|
||||
<span class="fa fa-directions"></span>
|
||||
|
||||
@ -55,7 +50,12 @@
|
||||
<a class="dropdown-item" href="../articles/datasets.html">
|
||||
<span class="fa fa-database"></span>
|
||||
|
||||
Data Sets for Download / Own Use
|
||||
Download Data Sets for Own Use
|
||||
</a>
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
Set User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/PCA.html">
|
||||
<span class="fa fa-compress"></span>
|
||||
@ -201,30 +201,30 @@
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="va">sir</span> <span class="op"><-</span> <span class="fu"><a href="random.html">random_sir</a></span><span class="op">(</span><span class="fl">10</span><span class="op">)</span></span></span>
|
||||
<span class="r-in"><span><span class="va">sir</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'sir'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] S R I S S R S I I S</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] S S I S R I I S S S</span>
|
||||
<span class="r-in"><span><span class="fu">mean_amr_distance</span><span class="op">(</span><span class="va">sir</span><span class="op">)</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] -0.4743416 1.8973666 -0.4743416 -0.4743416 -0.4743416 1.8973666</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [7] -0.4743416 -0.4743416 -0.4743416 -0.4743416</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] -0.3162278 -0.3162278 -0.3162278 -0.3162278 2.8460499 -0.3162278</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [7] -0.3162278 -0.3162278 -0.3162278 -0.3162278</span>
|
||||
<span class="r-in"><span></span></span>
|
||||
<span class="r-in"><span><span class="va">mic</span> <span class="op"><-</span> <span class="fu"><a href="random.html">random_mic</a></span><span class="op">(</span><span class="fl">10</span><span class="op">)</span></span></span>
|
||||
<span class="r-in"><span><span class="va">mic</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 0.25 64 64 0.01 0.025 128 256 4 128 256 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 0.01 8 0.25 64 0.025 128 1 0.01 128 128 </span>
|
||||
<span class="r-in"><span><span class="fu">mean_amr_distance</span><span class="op">(</span><span class="va">mic</span><span class="op">)</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] -0.8840919 0.5294878 0.5294878 -1.7046495 -1.4710682 0.7061853</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [7] 0.8828827 -0.1773020 0.7061853 0.8828827</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] -1.3051841 0.3547377 -0.5058733 0.8711043 -1.0776509 1.0432265</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [7] -0.1616289 -1.3051841 1.0432265 1.0432265</span>
|
||||
<span class="r-in"><span><span class="co"># equal to the Z-score of their log2:</span></span></span>
|
||||
<span class="r-in"><span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/Log.html" class="external-link">log2</a></span><span class="op">(</span><span class="va">mic</span><span class="op">)</span> <span class="op">-</span> <span class="fu"><a href="https://rdrr.io/r/base/mean.html" class="external-link">mean</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/Log.html" class="external-link">log2</a></span><span class="op">(</span><span class="va">mic</span><span class="op">)</span><span class="op">)</span><span class="op">)</span> <span class="op">/</span> <span class="fu"><a href="https://rdrr.io/r/stats/sd.html" class="external-link">sd</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/Log.html" class="external-link">log2</a></span><span class="op">(</span><span class="va">mic</span><span class="op">)</span><span class="op">)</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] -0.8840919 0.5294878 0.5294878 -1.7046495 -1.4710682 0.7061853</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [7] 0.8828827 -0.1773020 0.7061853 0.8828827</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] -1.3051841 0.3547377 -0.5058733 0.8711043 -1.0776509 1.0432265</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [7] -0.1616289 -1.3051841 1.0432265 1.0432265</span>
|
||||
<span class="r-in"><span></span></span>
|
||||
<span class="r-in"><span><span class="va">disk</span> <span class="op"><-</span> <span class="fu"><a href="random.html">random_disk</a></span><span class="op">(</span><span class="fl">10</span><span class="op">)</span></span></span>
|
||||
<span class="r-in"><span><span class="va">disk</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 13 36 18 50 14 40 38 15 45 48</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 17 43 40 10 41 48 32 39 42 29</span>
|
||||
<span class="r-in"><span><span class="fu">mean_amr_distance</span><span class="op">(</span><span class="va">disk</span><span class="op">)</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] -1.2438749 0.2860247 -0.9112880 1.2172680 -1.1773575 0.5520942</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [7] 0.4190595 -1.1108402 0.8846811 1.0842332</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] -1.3988539 0.7280585 0.4826455 -1.9714842 0.5644498 1.1370801</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [7] -0.1717891 0.4008412 0.6462542 -0.4172021</span>
|
||||
<span class="r-in"><span></span></span>
|
||||
<span class="r-in"><span><span class="va">y</span> <span class="op"><-</span> <span class="fu"><a href="https://rdrr.io/r/base/data.frame.html" class="external-link">data.frame</a></span><span class="op">(</span></span></span>
|
||||
<span class="r-in"><span> id <span class="op">=</span> <span class="va">LETTERS</span><span class="op">[</span><span class="fl">1</span><span class="op">:</span><span class="fl">10</span><span class="op">]</span>,</span></span>
|
||||
@ -234,22 +234,22 @@
|
||||
<span class="r-in"><span> tobr <span class="op">=</span> <span class="fu"><a href="random.html">random_mic</a></span><span class="op">(</span><span class="fl">10</span>, ab <span class="op">=</span> <span class="st">"tobr"</span>, mo <span class="op">=</span> <span class="st">"Escherichia coli"</span><span class="op">)</span></span></span>
|
||||
<span class="r-in"><span><span class="op">)</span></span></span>
|
||||
<span class="r-in"><span><span class="va">y</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> id amox cipr gent tobr</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1 A I 17 <=1 <=0.25</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2 B R 20 <=1 1</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 3 C R 28 >=16 1</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 4 D R 22 >=16 <=0.25</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 5 E I 24 >=16 >=4</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 6 F R 30 >=16 0.5</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 7 G R 17 >=16 >=4</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 8 H I 23 2 >=4</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 9 I I 27 8 0.5</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 10 J R 19 8 0.5</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> id amox cipr gent tobr</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1 A S 17 2 >=8</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2 B R 23 1 >=8</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 3 C I 18 8 >=8</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 4 D R 25 2 2</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 5 E S 30 8 >=8</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 6 F S 25 1 >=8</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 7 G I 22 0.5 >=8</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 8 H R 18 1 1</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 9 I S 19 4 >=8</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 10 J R 22 0.5 1</span>
|
||||
<span class="r-in"><span><span class="fu">mean_amr_distance</span><span class="op">(</span><span class="va">y</span><span class="op">)</span></span></span>
|
||||
<span class="r-msg co"><span class="r-pr">#></span> ℹ Calculating mean AMR distance based on columns "amox", "cipr", "gent",</span>
|
||||
<span class="r-msg co"><span class="r-pr">#></span> and "tobr"</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] -1.29633203 -0.33470083 0.68999803 0.04843526 0.30058957 0.64264079</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [7] 0.40191868 -0.19451042 -0.15234167 -0.10569739</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] -0.30902553 0.37446780 0.09125296 0.28702431 0.82880923 0.01327092</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [7] -0.34052588 -0.50251321 -0.01669175 -0.42606885</span>
|
||||
<span class="r-in"><span><span class="va">y</span><span class="op">$</span><span class="va">amr_distance</span> <span class="op"><-</span> <span class="fu">mean_amr_distance</span><span class="op">(</span><span class="va">y</span>, <span class="fu"><a href="https://tidyselect.r-lib.org/reference/where.html" class="external-link">where</a></span><span class="op">(</span><span class="va">is.mic</span><span class="op">)</span><span class="op">)</span></span></span>
|
||||
<span class="r-err co"><span class="r-pr">#></span> <span class="error">Error in .subset(x, j):</span> invalid subscript type 'list'</span>
|
||||
<span class="r-in"><span><span class="va">y</span><span class="op">[</span><span class="fu"><a href="https://rdrr.io/r/base/order.html" class="external-link">order</a></span><span class="op">(</span><span class="va">y</span><span class="op">$</span><span class="va">amr_distance</span><span class="op">)</span>, <span class="op">]</span></span></span>
|
||||
@ -265,17 +265,17 @@
|
||||
<span class="r-in"><span><span class="op">}</span></span></span>
|
||||
<span class="r-msg co"><span class="r-pr">#></span> ℹ Calculating mean AMR distance based on columns "amox", "cipr", "gent",</span>
|
||||
<span class="r-msg co"><span class="r-pr">#></span> and "tobr"</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> id amox cipr gent tobr amr_distance check_id_C</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1 C R 28 >=16 1 0.68999803 0.00000000</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2 F R 30 >=16 0.5 0.64264079 0.04735723</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 3 G R 17 >=16 >=4 0.40191868 0.28807934</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 4 E I 24 >=16 >=4 0.30058957 0.38940845</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 5 D R 22 >=16 <=0.25 0.04843526 0.64156276</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 6 J R 19 8 0.5 -0.10569739 0.79569542</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 7 I I 27 8 0.5 -0.15234167 0.84233970</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 8 H I 23 2 >=4 -0.19451042 0.88450845</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 9 B R 20 <=1 1 -0.33470083 1.02469886</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 10 A I 17 <=1 <=0.25 -1.29633203 1.98633005</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> id amox cipr gent tobr amr_distance check_id_C</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1 C I 18 8 >=8 0.09125296 0.00000000</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2 F S 25 1 >=8 0.01327092 0.07798204</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 3 I S 19 4 >=8 -0.01669175 0.10794471</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 4 D R 25 2 2 0.28702431 0.19577135</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 5 B R 23 1 >=8 0.37446780 0.28321484</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 6 A S 17 2 >=8 -0.30902553 0.40027849</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 7 G I 22 0.5 >=8 -0.34052588 0.43177884</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 8 J R 22 0.5 1 -0.42606885 0.51732181</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 9 H R 18 1 1 -0.50251321 0.59376617</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 10 E S 30 8 >=8 0.82880923 0.73755627</span>
|
||||
<span class="r-in"><span><span class="kw">if</span> <span class="op">(</span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">require</a></span><span class="op">(</span><span class="st"><a href="https://dplyr.tidyverse.org" class="external-link">"dplyr"</a></span><span class="op">)</span><span class="op">)</span> <span class="op">{</span></span></span>
|
||||
<span class="r-in"><span> <span class="co"># support for groups</span></span></span>
|
||||
<span class="r-in"><span> <span class="va">example_isolates</span> <span class="op"><a href="https://magrittr.tidyverse.org/reference/pipe.html" class="external-link">%>%</a></span></span></span>
|
||||
|
@ -10,7 +10,7 @@
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9146</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9147</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
@ -32,11 +32,6 @@
|
||||
How to
|
||||
</a>
|
||||
<div class="dropdown-menu" aria-labelledby="dropdown--how-to">
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/AMR.html">
|
||||
<span class="fa fa-directions"></span>
|
||||
|
||||
@ -55,7 +50,12 @@
|
||||
<a class="dropdown-item" href="../articles/datasets.html">
|
||||
<span class="fa fa-database"></span>
|
||||
|
||||
Data Sets for Download / Own Use
|
||||
Download Data Sets for Own Use
|
||||
</a>
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
Set User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/PCA.html">
|
||||
<span class="fa fa-compress"></span>
|
||||
|
@ -10,7 +10,7 @@
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9146</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9147</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
@ -32,11 +32,6 @@
|
||||
How to
|
||||
</a>
|
||||
<div class="dropdown-menu" aria-labelledby="dropdown--how-to">
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/AMR.html">
|
||||
<span class="fa fa-directions"></span>
|
||||
|
||||
@ -55,7 +50,12 @@
|
||||
<a class="dropdown-item" href="../articles/datasets.html">
|
||||
<span class="fa fa-database"></span>
|
||||
|
||||
Data Sets for Download / Own Use
|
||||
Download Data Sets for Own Use
|
||||
</a>
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
Set User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/PCA.html">
|
||||
<span class="fa fa-compress"></span>
|
||||
|
@ -10,7 +10,7 @@
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9146</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9147</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
@ -32,11 +32,6 @@
|
||||
How to
|
||||
</a>
|
||||
<div class="dropdown-menu" aria-labelledby="dropdown--how-to">
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/AMR.html">
|
||||
<span class="fa fa-directions"></span>
|
||||
|
||||
@ -55,7 +50,12 @@
|
||||
<a class="dropdown-item" href="../articles/datasets.html">
|
||||
<span class="fa fa-database"></span>
|
||||
|
||||
Data Sets for Download / Own Use
|
||||
Download Data Sets for Own Use
|
||||
</a>
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
Set User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/PCA.html">
|
||||
<span class="fa fa-compress"></span>
|
||||
@ -221,15 +221,12 @@
|
||||
<span class="r-out co"><span class="r-pr">#></span> (0.600), Eggerthia catenaformis (0.591), Eubacterium callanderi</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> (0.591), Enterocloster citroniae (0.587), Eubacterium cylindroides</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> (0.583), Enterococcus casseliflavus (0.577), Enterobacter cloacae</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> cloacae (0.571), Ehrlichia canis (0.567), Enterobacter cloacae</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> dissolvens (0.565), Eikenella corrodens (0.553), Erwinia cancerogena</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> (0.553), Enterobacter cloacae (0.550), Enterococcus cecorum (0.550),</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Ehrlichia chaffeensis (0.548), Enterobacter cancerogena (0.542),</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Enterobacter cancerogenus (0.540), Ezakiella coagulans (0.484),</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Effusibacillus consociatus (0.462), Enterococcus crotali (0.433),</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Erwinia coffeiphila (0.404), Eubacterium coprostanoligenes (0.402),</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Enterococcus columbae (0.397), Enterococcus camelliae (0.394), and</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Eubacterium cellulosolvens (0.385) [showing first 25]</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> cloacae (0.571), Ehrlichia canis (0.567), and Enterobacter cloacae</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> dissolvens (0.565)</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Only the first 10 other matches of each record are shown. Run</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> print(mo_uncertainties(), n = ...) to view more entries, or save</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> mo_uncertainties() to an object.</span>
|
||||
<span class="r-in"><span></span></span>
|
||||
<span class="r-in"><span><span class="fu">mo_matching_score</span><span class="op">(</span></span></span>
|
||||
<span class="r-in"><span> x <span class="op">=</span> <span class="st">"E. coli"</span>,</span></span>
|
||||
|
@ -10,7 +10,7 @@
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9146</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9147</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
@ -32,11 +32,6 @@
|
||||
How to
|
||||
</a>
|
||||
<div class="dropdown-menu" aria-labelledby="dropdown--how-to">
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/AMR.html">
|
||||
<span class="fa fa-directions"></span>
|
||||
|
||||
@ -55,7 +50,12 @@
|
||||
<a class="dropdown-item" href="../articles/datasets.html">
|
||||
<span class="fa fa-database"></span>
|
||||
|
||||
Data Sets for Download / Own Use
|
||||
Download Data Sets for Own Use
|
||||
</a>
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
Set User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/PCA.html">
|
||||
<span class="fa fa-compress"></span>
|
||||
|
@ -12,7 +12,7 @@ This is the fastest way to have your organisation (or analysis) specific codes p
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9146</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9147</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
@ -34,11 +34,6 @@ This is the fastest way to have your organisation (or analysis) specific codes p
|
||||
How to
|
||||
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|
||||
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@ -57,7 +52,12 @@ This is the fastest way to have your organisation (or analysis) specific codes p
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|
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|
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@ -10,7 +10,7 @@
|
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|
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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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|
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|
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|
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|
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@ -55,7 +50,12 @@
|
||||
<a class="dropdown-item" href="../articles/datasets.html">
|
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<span class="fa fa-database"></span>
|
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|
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Data Sets for Download / Own Use
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Download Data Sets for Own Use
|
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|
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Set User- Or Team-specific Package Settings
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Before Width: | Height: | Size: 26 KiB After Width: | Height: | Size: 26 KiB |
Before Width: | Height: | Size: 26 KiB After Width: | Height: | Size: 26 KiB |
Before Width: | Height: | Size: 27 KiB After Width: | Height: | Size: 27 KiB |
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Before Width: | Height: | Size: 38 KiB After Width: | Height: | Size: 38 KiB |
Before Width: | Height: | Size: 37 KiB After Width: | Height: | Size: 37 KiB |
Before Width: | Height: | Size: 36 KiB After Width: | Height: | Size: 37 KiB |
Before Width: | Height: | Size: 55 KiB After Width: | Height: | Size: 55 KiB |
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@ -10,7 +10,7 @@
|
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|
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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9146</small>
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@ -32,11 +32,6 @@
|
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How to
|
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</a>
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|
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<a class="dropdown-item" href="../reference/AMR-options.html">
|
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|
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|
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|
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@ -55,7 +50,12 @@
|
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<a class="dropdown-item" href="../articles/datasets.html">
|
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<span class="fa fa-database"></span>
|
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Download Data Sets for Own Use
|
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@ -12,7 +12,7 @@ resistance() should be used to calculate resistance, susceptibility() should be
|
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@ -34,11 +34,6 @@ resistance() should be used to calculate resistance, susceptibility() should be
|
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How to
|
||||
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<div class="dropdown-menu" aria-labelledby="dropdown--how-to">
|
||||
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|
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|
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|
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|
||||
@ -57,7 +52,12 @@ resistance() should be used to calculate resistance, susceptibility() should be
|
||||
<a class="dropdown-item" href="../articles/datasets.html">
|
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<span class="fa fa-database"></span>
|
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|
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Data Sets for Download / Own Use
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Download Data Sets for Own Use
|
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|
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|
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Set User- Or Team-specific Package Settings
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|
@ -10,7 +10,7 @@
|
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|
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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9146</small>
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|
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</a>
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|
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<a class="dropdown-item" href="../reference/AMR-options.html">
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|
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|
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|
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@ -55,7 +50,12 @@
|
||||
<a class="dropdown-item" href="../articles/datasets.html">
|
||||
<span class="fa fa-database"></span>
|
||||
|
||||
Data Sets for Download / Own Use
|
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Download Data Sets for Own Use
|
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</a>
|
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<a class="dropdown-item" href="../reference/AMR-options.html">
|
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Set User- Or Team-specific Package Settings
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@ -193,43 +193,42 @@
|
||||
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 2 256 0.005 0.5 0.001 64 0.0625 0.005 0.005 0.001 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [11] 0.125 0.0625 0.0625 0.002 32 2 0.0625 4 2 0.125 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [21] 0.005 0.002 0.005 16 128 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 128 0.25 0.01 1 0.005 32 0.0625 32 4 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [10] 64 8 128 0.5 128 0.005 64 <=0.002 0.025 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [19] 4 128 0.025 16 0.25 <=0.002 0.01 </span>
|
||||
<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 27 33 26 44 31 47 13 50 24 9 44 6 44 50 7 45 9 21 41 23 15 9 42 9 40</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 24 46 46 45 35 44 43 19 37 6 47 49 42 14 42 28 35 12 28 23 9 47 50 18 32</span>
|
||||
<span class="r-in"><span><span class="fu">random_sir</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'sir'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] R R I R S R I R S I S R R S R I S R I S I I I S I</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] I S I I I S S R I R I S R I I I R R I I R S I S I</span>
|
||||
<span class="r-in"><span></span></span>
|
||||
<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
|
||||
<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
|
||||
<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 0.01 0.25 <=0.001 16 0.002 0.125 4 0.25 >=64 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [10] 1 <=0.001 0.005 0.125 0.025 <=0.001 2 0.5 <=0.001</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [19] 0.002 0.25 0.0625 0.025 0.25 0.25 0.01 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 128 0.5 <=0.001 32 1 0.125 0.0625 0.25 4 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [10] 64 0.125 0.025 64 0.002 1 8 2 128 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [19] 32 1 2 0.005 0.01 1 0.005 </span>
|
||||
<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 32 16 0.5 8 4 <=0.25 2 1 2 0.5 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [11] 4 0.5 4 16 8 8 <=0.25 4 32 32 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [21] 0.5 0.5 16 0.5 16 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 16 32 <=1 8 2 8 16 32 4 2 4 2 <=1 2 8 <=1 16 <=1 8 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [20] 32 <=1 32 8 8 2 </span>
|
||||
<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 0.25 >=8 0.5 0.0625 0.5 0.0625 0.25 0.5 4 4 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [11] 4 1 1 >=8 >=8 >=8 2 0.25 0.25 2 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [21] >=8 >=8 0.5 0.25 1 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 0.5 4 4 4 0.0625 0.125 0.5 4 0.125 0.0625</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [11] 0.25 0.0625 0.0625 16 8 0.25 0.25 2 0.125 0.0625</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [21] 0.5 0.25 4 0.25 2 </span>
|
||||
<span class="r-in"><span></span></span>
|
||||
<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 17 47 43 49 8 36 33 21 38 30 39 13 41 22 47 21 19 12 47 12 36 46 48 47 27</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 12 22 49 15 47 47 30 29 25 40 40 42 49 19 28 49 29 18 13 43 26 48 34 34 31</span>
|
||||
<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 15 11 17 17 11 17 12 17 16 17 16 13 13 12 16 14 13 11 11 12 13 11 13 12 11</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 16 17 12 17 14 11 16 14 13 14 17 14 15 14 12 13 11 11 17 11 16 12 11 16 17</span>
|
||||
<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 20 17 19 16 20 24 17 23 19 25 27 19 22 19 23 18 23 24 21 24 26 21 27 18 17</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 21 15 17 17 17 25 20 23 16 24 27 15 23 25 23 15 16 19 23 18 22 25 26 15 17</span>
|
||||
<span class="r-in"><span><span class="co"># }</span></span></span>
|
||||
</code></pre></div>
|
||||
</div>
|
||||
|
@ -10,7 +10,7 @@
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9146</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9147</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -32,11 +32,6 @@
|
||||
How to
|
||||
</a>
|
||||
<div class="dropdown-menu" aria-labelledby="dropdown--how-to">
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
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|
||||
User- Or Team-specific Package Settings
|
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</a>
|
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|
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|
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|
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@ -55,7 +50,12 @@
|
||||
<a class="dropdown-item" href="../articles/datasets.html">
|
||||
<span class="fa fa-database"></span>
|
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|
||||
Data Sets for Download / Own Use
|
||||
Download Data Sets for Own Use
|
||||
</a>
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
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|
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Set User- Or Team-specific Package Settings
|
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</a>
|
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<a class="dropdown-item" href="../articles/PCA.html">
|
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<span class="fa fa-compress"></span>
|
||||
|
@ -12,7 +12,7 @@ When negative ('left-skewed'): the left tail is longer; the mass of the distribu
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9146</small>
|
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9147</small>
|
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@ -34,11 +34,6 @@ When negative ('left-skewed'): the left tail is longer; the mass of the distribu
|
||||
How to
|
||||
</a>
|
||||
<div class="dropdown-menu" aria-labelledby="dropdown--how-to">
|
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<a class="dropdown-item" href="../reference/AMR-options.html">
|
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<span class="fa fa-gear"></span>
|
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|
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User- Or Team-specific Package Settings
|
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</a>
|
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<a class="dropdown-item" href="../articles/AMR.html">
|
||||
<span class="fa fa-directions"></span>
|
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|
||||
@ -57,7 +52,12 @@ When negative ('left-skewed'): the left tail is longer; the mass of the distribu
|
||||
<a class="dropdown-item" href="../articles/datasets.html">
|
||||
<span class="fa fa-database"></span>
|
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|
||||
Data Sets for Download / Own Use
|
||||
Download Data Sets for Own Use
|
||||
</a>
|
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<a class="dropdown-item" href="../reference/AMR-options.html">
|
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<span class="fa fa-gear"></span>
|
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|
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Set User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/PCA.html">
|
||||
<span class="fa fa-compress"></span>
|
||||
@ -181,7 +181,7 @@ When negative ('left-skewed'): the left tail is longer; the mass of the distribu
|
||||
<div class="section level2">
|
||||
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">skewness</span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/stats/Uniform.html" class="external-link">runif</a></span><span class="op">(</span><span class="fl">1000</span><span class="op">)</span><span class="op">)</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 0.002064919</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] -0.03534482</span>
|
||||
</code></pre></div>
|
||||
</div>
|
||||
</main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2>
|
||||
|
@ -10,7 +10,7 @@
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9146</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9147</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
@ -32,11 +32,6 @@
|
||||
How to
|
||||
</a>
|
||||
<div class="dropdown-menu" aria-labelledby="dropdown--how-to">
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/AMR.html">
|
||||
<span class="fa fa-directions"></span>
|
||||
|
||||
@ -55,7 +50,12 @@
|
||||
<a class="dropdown-item" href="../articles/datasets.html">
|
||||
<span class="fa fa-database"></span>
|
||||
|
||||
Data Sets for Download / Own Use
|
||||
Download Data Sets for Own Use
|
||||
</a>
|
||||
<a class="dropdown-item" href="../reference/AMR-options.html">
|
||||
<span class="fa fa-gear"></span>
|
||||
|
||||
Set User- Or Team-specific Package Settings
|
||||
</a>
|
||||
<a class="dropdown-item" href="../articles/PCA.html">
|
||||
<span class="fa fa-compress"></span>
|
||||
|