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(v2.1.1.9111) add betalactams_with_inhibitor()
, fixes #175
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@ -440,6 +440,9 @@ pre_commit_lst$AB_TRIMETHOPRIMS <- antibiotics %>%
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pull(ab)
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pre_commit_lst$AB_UREIDOPENICILLINS <- as.ab(c("PIP", "TZP", "AZL", "MEZ"))
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pre_commit_lst$AB_BETALACTAMS <- c(pre_commit_lst$AB_PENICILLINS, pre_commit_lst$AB_CEPHALOSPORINS, pre_commit_lst$AB_CARBAPENEMS)
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pre_commit_lst$AB_BETALACTAMS_WITH_INHIBITOR <- antibiotics %>%
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filter(name %like% "/" & name %unlike% "EDTA" & ab %in% pre_commit_lst$AB_BETALACTAMS) %>%
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pull(ab)
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# this will be used for documentation:
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pre_commit_lst$DEFINED_AB_GROUPS <- sort(names(pre_commit_lst)[names(pre_commit_lst) %like% "^AB_" & names(pre_commit_lst) != "AB_LOOKUP"])
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create_AB_AV_lookup <- function(df) {
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@ -638,7 +641,7 @@ suppressMessages(set_AMR_locale("English"))
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# Update URLs -------------------------------------------------------------
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usethis::ui_info("Checking URLs for redirects")
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invisible(capture.output(urlchecker::url_update()))
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invisible(urlchecker::url_update("."))
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# Document pkg ------------------------------------------------------------
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