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(v2.1.1.9111) add betalactams_with_inhibitor(), fixes #175

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dr. M.S. (Matthijs) Berends
2024-12-06 15:44:20 +01:00
parent 059618e710
commit 0488d00f20
18 changed files with 286 additions and 302 deletions
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5
data-raw/_pre_commit_checks.R
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@ -440,6 +440,9 @@ pre_commit_lst$AB_TRIMETHOPRIMS <- antibiotics %>%
pull(ab)
pre_commit_lst$AB_UREIDOPENICILLINS <- as.ab(c("PIP", "TZP", "AZL", "MEZ"))
pre_commit_lst$AB_BETALACTAMS <- c(pre_commit_lst$AB_PENICILLINS, pre_commit_lst$AB_CEPHALOSPORINS, pre_commit_lst$AB_CARBAPENEMS)
pre_commit_lst$AB_BETALACTAMS_WITH_INHIBITOR <- antibiotics %>%
filter(name %like% "/" & name %unlike% "EDTA" & ab %in% pre_commit_lst$AB_BETALACTAMS) %>%
pull(ab)
# this will be used for documentation:
pre_commit_lst$DEFINED_AB_GROUPS <- sort(names(pre_commit_lst)[names(pre_commit_lst) %like% "^AB_" & names(pre_commit_lst) != "AB_LOOKUP"])
create_AB_AV_lookup <- function(df) {
@ -638,7 +641,7 @@ suppressMessages(set_AMR_locale("English"))
# Update URLs -------------------------------------------------------------
usethis::ui_info("Checking URLs for redirects")
invisible(capture.output(urlchecker::url_update()))
invisible(urlchecker::url_update("."))
# Document pkg ------------------------------------------------------------