From 04df6dfcf554449bfb7f6e16d2720880ec1da109 Mon Sep 17 00:00:00 2001
From: Matthijs Berends <m.s.berends@umcg.nl>
Date: Tue, 23 Apr 2024 10:33:26 +0200
Subject: [PATCH] fix website nav header (no-check)

---
 .github/prehooks/{pre-commit => commit-msg} | 12 ++++++++-
 pkgdown/extra.css                           | 29 +++++++++++++++++----
 2 files changed, 35 insertions(+), 6 deletions(-)
 rename .github/prehooks/{pre-commit => commit-msg} (94%)

diff --git a/.github/prehooks/pre-commit b/.github/prehooks/commit-msg
similarity index 94%
rename from .github/prehooks/pre-commit
rename to .github/prehooks/commit-msg
index ca2fc874..aae4609c 100755
--- a/.github/prehooks/pre-commit
+++ b/.github/prehooks/commit-msg
@@ -29,7 +29,17 @@
 # how to conduct AMR data analysis: https://msberends.github.io/AMR/   #
 # ==================================================================== #
 
-echo "Running pre-commit hook..."
+#!/bin/bash
+
+echo "Running commit-msg hook..."
+
+# check if the commit message contains '(no-check)' or '(no-verify)'
+COMMIT_MSG=$(cat "$1")
+if [[ "$COMMIT_MSG" =~ \(no-check\)|\(no-verify\) ]]; then
+  echo "Commit check bypassed by commit message."
+  exit 0
+fi
+
 
 # ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 if command -v Rscript > /dev/null; then
diff --git a/pkgdown/extra.css b/pkgdown/extra.css
index 7c3f2919..63517090 100644
--- a/pkgdown/extra.css
+++ b/pkgdown/extra.css
@@ -36,11 +36,10 @@
   --amr-green-dark-rgb: 18, 143, 118;
   --amr-green-middle: #60a799;
   --amr-green-middle-rgb: 96, 167, 153;
-  --amr-blue-light: #a8d5ef
+  --amr-blue-light: #a8d5ef;
   --amr-blue-light-rgb: 168, 213, 239;
 
-  --bs-success: var(--amr-green-dark) !important);
-  --bs-link-color: var(--amr-green-dark) !important;
+  --bs-success: var(--amr-green-dark) !important;
   --bs-light: var(--amr-green-light) !important;
   /* --bs-light was this: #128f76a6; that's success with 60% alpha */
   --bs-info: var(--amr-green-middle) !important;
@@ -58,14 +57,34 @@
   --bs-navbar-brand-color: white !important;
   --bs-navbar-brand-color-hover: white !important;
   --bs-nav-link-color: white !important;
+  --bs-navbar-active-color: var(--amr-green-light) !important;
   --bs-bg-opacity: 1 !important;
+  
+  --bs-dropdown-bg: var(--amr-green-dark) !important;
+  --bs-dropdown-link-color: white !important;
+  --bs-dropdown-link-color: white !important;
+  --bs-dropdown-link-hover-color: var(--amr-green-light) !important;
+  --bs-dropdown-link-hover-bg: var(--amr-green-dark) !important;
+  --bs-dropdown-link-active-color: white !important;
+  
 }
-.nav-text.text-muted {
-  color: var(--amr-green-dark) !important;
+.nav-text.text-muted,
+.bg-primary .navbar-nav .show>.nav-link,
+.bg-primary .navbar-nav .nav-link.active,
+.bg-primary .navbar-nav .nav-link:hover,
+.bg-primary .navbar-nav .nav-link:focus {
+  color: var(--amr-green-light) !important;
+}
+.navbar-dark .navbar-nav .nav-item > .nav-link:hover,
+.navbar-light .navbar-nav .nav-item>.nav-link:hover {
+  background: none !important;
 }
 .navbar-dark input[type="search"] {
   background-color: var(--amr-green-light) !important;
 }
+.navbar-nav .nav-item > .nav-link {
+  border-radius: 0 !important;
+}
 .form-control:focus {
   box-shadow: none !important;
 }