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@@ -3,7 +3,7 @@
**Note:** values on this page will change with every website update
since they are based on randomly created values and the page was written
in [R Markdown](https://rmarkdown.rstudio.com/). However, the
methodology remains unchanged. This page was generated on 08 January
methodology remains unchanged. This page was generated on 16 January
2026.
## Introduction
@@ -52,9 +52,9 @@ structure of your data generally look like this:
| date | patient_id | mo | AMX | CIP |
|:----------:|:----------:|:----------------:|:---:|:---:|
| 2026-01-08 | abcd | Escherichia coli | S | S |
| 2026-01-08 | abcd | Escherichia coli | S | R |
| 2026-01-08 | efgh | Escherichia coli | R | S |
| 2026-01-16 | abcd | Escherichia coli | S | S |
| 2026-01-16 | abcd | Escherichia coli | S | R |
| 2026-01-16 | efgh | Escherichia coli | R | S |
### Needed R packages
@@ -318,6 +318,8 @@ our_data <- our_data %>%
mutate(first = first_isolate(info = TRUE))
#> ℹ Determining first isolates using an episode length of 365 days
#> ℹ Using column 'bacteria' as input for `col_mo`.
#> ℹ Column 'first' is SIR eligible (despite only having empty values), since
#> it seems to be cefozopran (ZOP)
#> ℹ Using column 'date' as input for `col_date`.
#> ℹ Using column 'patient_id' as input for `col_patient_id`.
#> ℹ Basing inclusion on all antimicrobial results, using a points threshold