P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2026-02-09 07:53:02 +01:00
Code Releases Activity

Built site for AMR@3.0.1.9018: 2df2911

Browse Source
This commit is contained in:
github-actions
2026-01-16 10:08:12 +00:00
parent 86f19c7576
commit 0551ea51cb
100 changed files with 264 additions and 236 deletions
Download Patch File Download Diff File Expand all files Collapse all files

36
reference/antimicrobial_selectors.md
View File

@@ -231,7 +231,7 @@ codes or names of *E. coli* and *K. pneumoniae* and contains a column
"vancomycin", this column will be removed (or rather, unselected) using
this function. It currently applies ['EUCAST Expected Resistant
Phenotypes'
v1.2](https://www.eucast.org/expert_rules_and_expected_phenotypes)
v1.2](https://www.eucast.org/bacteria/important-additional-information/expert-rules/)
(2023) to determine intrinsic resistance, using the
[`eucast_rules()`](https://amr-for-r.org/reference/eucast_rules.md)
function internally. Because of this determination, this function is
@@ -559,14 +559,21 @@ quite slow in terms of performance.
pristinamycin (PRI) and quinupristin/dalfopristin (QDA)
- `sulfonamides()` can select:
brodimoprim (BDP), sulfadiazine (SDI), sulfadiazine/tetroxoprim (SLT),
sulfadimethoxine (SUD), sulfadimidine (SDM), sulfafurazole (SLF),
sulfaisodimidine (SLF1), sulfalene (SLF2), sulfamazone (SZO),
sulfamerazine (SLF3), sulfamethizole (SLF4), sulfamethoxazole (SMX),
isoniazid/sulfamethoxazole/trimethoprim/pyridoxine (IST),
ormetroprim/sulfamethoxazole (ORS), sulfachlorpyridazine (SUP),
sulfadiazine (SDI), sulfadiazine/tetroxoprim (SLT),
sulfadiazine/trimethoprim (SLT1), sulfadimethoxine (SUD),
sulfadimidine (SDM), sulfadimidine/trimethoprim (SLT2), sulfafurazole
(SLF), sulfaisodimidine (SLF1), sulfalene (SLF2), sulfamazone (SZO),
sulfamerazine (SLF3), sulfamerazine/trimethoprim (SLT3),
sulfamethazine (SUM), sulfamethizole (SLF4), sulfamethoxazole (SMX),
sulfamethoxypyridazine (SLF5), sulfametomidine (SLF6),
sulfametoxydiazine (SLF7), sulfamoxole (SLF8), sulfanilamide (SLF9),
sulfaperin (SLF10), sulfaphenazole (SLF11), sulfapyridine (SLF12),
sulfathiazole (SUT), and sulfathiourea (SLF13)
sulfametoxydiazine (SLF7), sulfametrole/trimethoprim (SLT4),
sulfamoxole (SLF8), sulfamoxole/trimethoprim (SLT5), sulfanilamide
(SLF9), sulfaperin (SLF10), sulfaphenazole (SLF11), sulfapyridine
(SLF12), sulfasuccinamide (SNA), sulfathiazole (SUT), sulfathiourea
(SLF13), sulfisoxazole (SOX), sulfonamide (SSS), and
trimethoprim/sulfamethoxazole (SXT)
- `tetracyclines()` can select:
cetocycline (CTO), chlortetracycline (CTE), clomocycline (CLM1),
@@ -574,13 +581,16 @@ quite slow in terms of performance.
lymecycline (LYM), metacycline (MTC), minocycline (MNO), omadacycline
(OMC), oxytetracycline (OXY), penimepicycline (PNM1), rolitetracycline
(RLT), sarecycline (SRC), tetracycline (TCY), tetracycline screening
test (TCY-S), and tigecycline (TGC)
test (TCY-S), tetracycline/oleandomycin (TOL), and tigecycline (TGC)
- `trimethoprims()` can select:
brodimoprim (BDP), sulfadiazine (SDI), sulfadiazine/tetroxoprim (SLT),
sulfadiazine/trimethoprim (SLT1), sulfadimethoxine (SUD),
sulfadimidine (SDM), sulfadimidine/trimethoprim (SLT2), sulfafurazole
(SLF), sulfaisodimidine (SLF1), sulfalene (SLF2), sulfamazone (SZO),
brodimoprim (BDP), iclaprim (ICL),
isoniazid/sulfamethoxazole/trimethoprim/pyridoxine (IST),
ormetroprim/sulfamethoxazole (ORS), sulfadiazine (SDI),
sulfadiazine/tetroxoprim (SLT), sulfadiazine/trimethoprim (SLT1),
sulfadimethoxine (SUD), sulfadimidine (SDM),
sulfadimidine/trimethoprim (SLT2), sulfafurazole (SLF),
sulfaisodimidine (SLF1), sulfalene (SLF2), sulfamazone (SZO),
sulfamerazine (SLF3), sulfamerazine/trimethoprim (SLT3),
sulfamethizole (SLF4), sulfamethoxazole (SMX), sulfamethoxypyridazine
(SLF5), sulfametomidine (SLF6), sulfametoxydiazine (SLF7),