From 059618e710d2f54a360536710a4cd42f54498401 Mon Sep 17 00:00:00 2001 From: Matthijs Berends Date: Thu, 21 Nov 2024 22:23:40 +0100 Subject: [PATCH] (v2.1.1.9110) update Py pkg --- DESCRIPTION | 2 +- NEWS.md | 2 +- PythonPackage/AMR/AMR.egg-info/PKG-INFO | 2 +- PythonPackage/AMR/AMR/datasets.py | 4 ++-- ...ny.whl => AMR-2.1.1.9110-py3-none-any.whl} | Bin 9935 -> 9930 bytes PythonPackage/AMR/dist/amr-2.1.1.9109.tar.gz | Bin 9702 -> 0 bytes PythonPackage/AMR/dist/amr-2.1.1.9110.tar.gz | Bin 0 -> 9709 bytes PythonPackage/AMR/setup.py | 2 +- data-raw/_generate_python_wrapper.sh | 4 ++-- ....txt => gpt_training_text_v2.1.1.9110.txt} | 2 +- 10 files changed, 9 insertions(+), 9 deletions(-) rename PythonPackage/AMR/dist/{AMR-2.1.1.9109-py3-none-any.whl => AMR-2.1.1.9110-py3-none-any.whl} (73%) delete mode 100644 PythonPackage/AMR/dist/amr-2.1.1.9109.tar.gz create mode 100644 PythonPackage/AMR/dist/amr-2.1.1.9110.tar.gz rename data-raw/{gpt_training_text_v2.1.1.9109.txt => gpt_training_text_v2.1.1.9110.txt} (99%) diff --git a/DESCRIPTION b/DESCRIPTION index 89838e50..6b5bc3f9 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,5 +1,5 @@ Package: AMR -Version: 2.1.1.9109 +Version: 2.1.1.9110 Date: 2024-11-21 Title: Antimicrobial Resistance Data Analysis Description: Functions to simplify and standardise antimicrobial resistance (AMR) diff --git a/NEWS.md b/NEWS.md index 472dcb62..b19d7812 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,4 +1,4 @@ -# AMR 2.1.1.9109 +# AMR 2.1.1.9110 *(this beta version will eventually become v3.0. We're happy to reach a new major milestone soon, which will be all about the new One Health support! Install this beta using [the instructions here](https://msberends.github.io/AMR/#latest-development-version).)* diff --git a/PythonPackage/AMR/AMR.egg-info/PKG-INFO b/PythonPackage/AMR/AMR.egg-info/PKG-INFO index 5113b60e..a834e1c0 100644 --- a/PythonPackage/AMR/AMR.egg-info/PKG-INFO +++ b/PythonPackage/AMR/AMR.egg-info/PKG-INFO @@ -1,6 +1,6 @@ Metadata-Version: 2.1 Name: AMR -Version: 2.1.1.9109 +Version: 2.1.1.9110 Summary: A Python wrapper for the AMR R package Home-page: https://github.com/msberends/AMR Author: Dr. Matthijs Berends diff --git a/PythonPackage/AMR/AMR/datasets.py b/PythonPackage/AMR/AMR/datasets.py index af5f3e88..096ed8a2 100644 --- a/PythonPackage/AMR/AMR/datasets.py +++ b/PythonPackage/AMR/AMR/datasets.py @@ -29,13 +29,13 @@ if not isinstalled('AMR'): try: python_amr_version = metadata.version('AMR') except metadata.PackageNotFoundError: - python_amr_version = None + python_amr_version = '' # R package version of AMR r_amr_version = robjects.r(f'as.character(packageVersion("AMR", lib.loc = "{r_lib_path}"))')[0] # Compare R and Python package versions -if python_amr_version and r_amr_version != python_amr_version: +if r_amr_version != python_amr_version: try: print(f"{BLUE}AMR:{RESET} Updating package version{RESET}", flush=True) utils = importr('utils') diff --git a/PythonPackage/AMR/dist/AMR-2.1.1.9109-py3-none-any.whl b/PythonPackage/AMR/dist/AMR-2.1.1.9110-py3-none-any.whl similarity index 73% rename from PythonPackage/AMR/dist/AMR-2.1.1.9109-py3-none-any.whl rename to PythonPackage/AMR/dist/AMR-2.1.1.9110-py3-none-any.whl index 8fb5c5d1a300a82fe0d873a37efc9bd0a20c973d..5a97c1319061c83f134db1fdb5633806c7a047f7 100644 GIT binary patch delta 1751 zcmX@_d&-w5z?+#xgn@y9gMoAPMjj*9dd}6Qk*U`gyKi7-V5s6`VBiNzI{F6brzDmn z7N?dJ>lIXP4fD;vZ6UDtbNGf+jzSMsIc}P6daZp+U^mlUlLEU94rT%wnIfB~dFXmB zHRJjJT{cL5TB!Q$(^70Myy^G$%rsx}_v7tYpY$vLe}DP&=i&GJUh`{a9{(7cZ)NX% zx!z`9XMXi%%_t6i?Ug)JXFc(n77{w!_|~l{F@GAa@RTh&cV%aYPm0fc&AKD%t0HzK z`CqU$=Qmv#Q@oH@o9o00MuDUGS8va9KPVo^*_L|7VE6sCoR$mY4+Lyx=`r)pS`uwv zoSGFDAh2W7B9_Dx#`{#xWwuRq^G~=S@Z)>@^X=vJ;`b;0cy*6o({|x?W|?VH|7v9T zjN_fov0kurt?F9o>-2~vxGSR;iVpwb!bAEkx&AVFh&@rd$TrvkZ zq^`v*7U2lmB$^WQGNIotbDQwaS$9`S>0I)?Jxh>hQ}=}g?yD&WO%yhUO+T>xecg*Q zftMwPcccwY@+%mbM^?cffAl132*UaCu!gT9Vfr#Y+Gwc6;D`l=zJ)0ic ztrO<8DmLbM?8D){C>Q&=}x+p*L0tUYnr&C8h%fk+kWxhkyG-bMn^sJcTX>R z-nvlUZjPOmXKJKjYC5a`LvGzmVP~E7-lw^9WpTZgez__vW`@G|ZSo)cZYi#Qc`eq( zx+*;J@Qw;8_3ZBxYvZm|-8^-@{^4FL^Z(c1MBE8`alGo}f2Nk} z^5;xv{24CxIaVvjD?Lj;>UCks{x{0kl34j9udP|b<*{QLtCXpvbinG`HGg|om>sN7 z=&7|~jP(0ok>5STufFm0r*`+<(HmB2nK@2N&fV&<@yn9MeSF_J4VJaQma*{oCXtQ&N)RdF%BRD^6biy8X$@NkO)T2TNC;eE7Ql z>$R<43{o8aoOriDD4JQgO@GIcz{==VjsGpqCuC1i(cSStQ+rY?)3#L~*e~tTy}j{3 z;jLu5#edez>{|OZOs(FFM)Cb2Bi+uVP>jfadYE(!9;qoJQPA z+`vM>Tzl8uWxNawC29-|iVy|5MtX)oXlZC@Fu7l(lIiA#&0L}$ykODty`h0#N@j71Zf0IuzJ8Favwx6F z?K$84CIg0shr9PL)d<#Yh`CPU~@6kM$9A0PkTiFX7J!K{M z+jD+y)2;aZ$f7>2aM8;(uXgXt4rqyy>?rnrmC7Jy+n8OW7}OfYNDJDwqAc1{PD1*)q{*V46#-H zpPqHRUZnj>asNm4b!R7*ACml*JL%`&OTq7zye8|OT=jLK{)N5!FSNRt^yFFoNVnLs ztS*De;0I%XHzSh>GoohaGCYp!;mJ0D=u zU!VWzc3er9(4o^_TFy(=c1}_az51+Yn~|!xy@DyT@0Cug$z7d2FO84(-*6H24u8X0 z_4wIRwJF(pTM}IvB`p~i{a9TU`C03SlGecuJ(6i(@6MVa{EL;x)Y~C{^AfjRUyZ|; zrLnR$YHNB4wAnmXD|9nHV^YP`+;m|7f2;j_cmJrLb|n0JoySYgy>bsWT>0?)ae>57 zp(4G8bDEceeR8F^>~}^MUA*AHzDOv9pXqk!7w00uFFk5kW=CtkZRL>Wj@2$;P|k=b z?p^CJVbWTK$6oB!UpyE4J;^FtowdQkJU7$L;Dnx2qi@J$*2@h?ZtY{)clY-~VRz4T zQx4%th4wS%2xaf4(KxxNPdT+^vPrSbAGb4wtdpRsDE4C7>qjFt=^bdlruc z;cjb_FZBjJwqMAlwKDzRr5RrS_B9$`nM68#++Wq|Zph^_KJh?O_y0=E8QZi@{Hscy z7W8G#TGiuw&*W+yS>fxvwkVBLJM_}bGrvxDM+MI2X)NWMdUJLCdg%|^nRch6QZ@z! 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Remember this whenever someone asks which AMR package version you’re at. +First and foremost, you are trained on version 2.1.1.9110. Remember this whenever someone asks which AMR package version you’re at. -------------------------------- THE PART HEREAFTER CONTAINS CONTENTS FROM FILE 'NAMESPACE':