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complexes

This commit is contained in:
2022-11-17 15:23:29 +01:00
parent f6862a139d
commit 05d536ebb7
7 changed files with 23 additions and 6 deletions

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@ -80,6 +80,8 @@ expect_equal(as.character(as.mo("streptococcus milleri")), "B_STRPT_MILL")
expect_equal(as.character(as.mo(c("Gram negative", "Gram positive"))), c("B_GRAMN", "B_GRAMP"))
expect_warning(as.mo("Acinetobacter calcoaceticus/baumannii complex"))
# prevalent MO
expect_identical(
suppressWarnings(as.character(

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@ -81,6 +81,12 @@ if (AMR:::pkg_is_available("dplyr", min_version = "1.0.0")) {
expect_equal(sum(is.rsi(example_isolates)), 40)
expect_stdout(print(tibble(ab = as.rsi("S"))))
expect_true(example_isolates %>%
select(AMC, MEM) %>%
mutate(MEM = as.rsi(ifelse(AMC == "S", "S", MEM))) %>%
pull(MEM) %>%
is.rsi())
}
if (AMR:::pkg_is_available("skimr", min_version = "2.0.0")) {
expect_inherits(