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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9038</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9039</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -178,42 +178,43 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.0625 0.125 0.005 0.01 0.125 1 0.5 0.005 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.002 0.25 <=0.001 8 128 8 1 0.002 0.025 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.002 0.0625 >=256 128 16 0.125 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.01 256 2 2 256 1 0.001 64 0.01 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 128 16 64 0.0625 16 128 0.0625 256 2 0.001 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 128 0.01 8 64 64 </span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 42 13 15 41 49 27 45 44 25 40 42 27 12 47 33 46 43 47 8 29 50 30 46 10 47</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 22 38 41 24 23 27 40 16 21 48 10 47 30 44 20 25 29 30 33 19 12 45 19 24 33</span>
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<span class="r-in"><span><span class="fu">random_rsi</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'rsi'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] R I S I S S S R I S R I S R I S S S R I I R I R S</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] S S I I S R S S S S S S R I R I I I R I R I R S I</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 128 <=0.001 128 0.002 32 0.025 0.5 2 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.002 0.25 0.005 16 32 8 0.0625 64 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.002 4 0.125 64 16 0.01 0.002 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 8 2 0.125 32 4 <=0.001 0.0625 0.25 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.002 32 8 <=0.001 <=0.001 4 0.025 0.005 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.0625 0.002 0.005 0.025 64 0.025 0.002 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.5 16 2 16 4 16 0.5 2 0.25 2 8 4 2 4 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [16] 4 0.25 0.25 1 1 1 4 2 16 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 16 1 4 16 32 8 16 <=0.5 32 4 64 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 64 <=0.5 1 8 1 1 <=0.5 1 16 <=0.5 8 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 64 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] <=0.025 1 0.5 0.5 0.0625 0.0625 <=0.025 1 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] <=0.025 2 2 0.5 4 <=0.025 1 4 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.25 0.0625 4 0.125 2 0.125 0.0625 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.5 0.5 1 1 8 16 4 0.125 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 2 1 1 8 <=0.025 16 4 16 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 1 4 2 0.0625 0.125 <=0.025 1 </span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 17 10 48 50 9 49 47 33 25 47 24 45 18 10 46 20 48 10 36 48 38 40 28 17 50</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 17 22 48 47 18 37 40 13 34 50 33 31 14 30 24 34 13 21 43 31 36 33 45 46 39</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 17 13 12 11 16 15 15 16 17 14 14 15 15 16 17 15 15 14 13 13 16 11 17 15 14</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 12 17 11 11 15 14 14 13 14 11 13 11 16 15 12 14 17 11 17 14 13 17 16 13 16</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 16 17 20 17 20 16 26 19 20 16 18 22 27 24 16 24 26 26 18 20 18 17 16 15 23</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 17 16 18 18 22 16 21 25 15 22 25 26 26 26 19 22 25 19 24 27 23 20 17 23 27</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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