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(v1.4.0.9020) mo_is_intrinsic_resistant

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dr. M.S. (Matthijs) Berends
2020-11-16 11:03:24 +01:00
parent 9666b78ea7
commit 05fb213a7c
24 changed files with 228 additions and 144 deletions
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14
tests/testthat/test-mo_property.R
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@ -113,14 +113,20 @@ test_that("mo_property works", {
expect_equal(nrow(subset(x, f1 != f2)), 0)
# is gram pos/neg (also return FALSE for all non-bacteria)
expect_equal(is_gram_negative(c("Escherichia coli", "Staphylococcus aureus", "Candida albicans")),
expect_equal(mo_is_gram_negative(c("Escherichia coli", "Staphylococcus aureus", "Candida albicans")),
c(TRUE, FALSE, FALSE))
expect_equal(is_gram_positive(c("Escherichia coli", "Staphylococcus aureus", "Candida albicans")),
expect_equal(mo_is_gram_positive(c("Escherichia coli", "Staphylococcus aureus", "Candida albicans")),
c(FALSE, TRUE, FALSE))
# is intrinsic resistant
expect_equal(mo_is_intrinsic_resistant(c("Escherichia coli", "Staphylococcus aureus", "Candida albicans"),
"vanco"),
c(TRUE, FALSE, FALSE))
library(dplyr)
expect_equal(example_isolates %>% filter(is_gram_negative()) %>% nrow(),
expect_equal(example_isolates %>% filter(mo_is_gram_negative()) %>% nrow(),
730)
expect_equal(example_isolates %>% filter(is_gram_positive()) %>% nrow(),
expect_equal(example_isolates %>% filter(mo_is_gram_positive()) %>% nrow(),
1238)
expect_equal(example_isolates %>% filter(mo_is_intrinsic_resistant(ab = "Vancomycin")) %>% nrow(),
710)
})