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(v1.5.0.9022) mo properties speed improvement
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@ -51,18 +51,19 @@ create_species_cons_cops <- function(type = c("CoNS", "CoPS")) {
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"lentus", "lugdunensis", "massiliensis", "microti",
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"muscae", "nepalensis", "pasteuri", "petrasii",
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"pettenkoferi", "piscifermentans", "pseudoxylosus",
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"rostri", "saccharolyticus", "saprophyticus",
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"pulvereri", "rostri", "saccharolyticus", "saprophyticus",
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"sciuri", "simulans", "stepanovicii", "succinus",
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"vitulinus", "warneri", "xylosus")
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"vitulinus", "vitulus", "warneri", "xylosus")
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| (MO_staph$species == "schleiferi" & MO_staph$subspecies %in% c("schleiferi", ""))),
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"mo", drop = TRUE]
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} else if (type == "CoPS") {
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MO_staph[which(MO_staph$species %in% c("coagulase-positive",
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"simiae", "agnetis",
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"agnetis", "argenteus",
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"cornubiensis",
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"delphini", "lutrae",
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"hyicus", "intermedius",
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"pseudintermedius", "pseudointermedius",
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"schweitzeri", "argenteus")
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"schweitzeri", "simiae")
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| (MO_staph$species == "schleiferi" & MO_staph$subspecies == "coagulans")),
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"mo", drop = TRUE]
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}
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