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(v1.5.0.9022) mo properties speed improvement

This commit is contained in:
2021-02-21 22:56:35 +01:00
parent 5ef8cb41a7
commit 062c49fca1
19 changed files with 76 additions and 47 deletions

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@ -86,3 +86,13 @@ test_that("CoL version info works", {
expect_output(print(catalogue_of_life_version()))
})
test_that("CoNS/CoPS are up to date", {
uncategorised <- subset(microorganisms,
genus == "Staphylococcus" &
!species %in% c("", "aureus") &
!mo %in% c(MO_CONS, MO_COPS))
expect(NROW(uncategorised) == 0,
failure_message = paste0("Staphylococcal species not categorised as CoNS/CoPS: S. ",
uncategorised$species, " (", uncategorised$mo, ")"))
})