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Package: AMR
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Version: 2.1.1.9087
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Date: 2024-10-02
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Version: 2.1.1.9089
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Date: 2024-10-04
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Title: Antimicrobial Resistance Data Analysis
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Description: Functions to simplify and standardise antimicrobial resistance (AMR)
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data analysis and to work with microbial and antimicrobial properties by
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# AMR 2.1.1.9087
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# AMR 2.1.1.9089
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*(this beta version will eventually become v3.0. We're happy to reach a new major milestone soon, which will be all about the new One Health support! Install this beta using [the instructions here](https://msberends.github.io/AMR/#latest-development-version).)*
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# `AMR` (for R)
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<a href="https://msberends.github.io/AMR/"><img src="https://msberends.github.io/AMR/AMR_intro.png" align="center"></a>
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<a target="_blank" href="https://chatgpt.com/g/g-M4UNLwFi5-amr-for-r-assistant"><img src="https://github.com/msberends/AMR/raw/main/pkgdown/assets/AMRforRGPT.svg" style="width: 400px;"></a>
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----
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home:
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sidebar:
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structure: [toc, links, authors]
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structure: [gpthelp, toc, links, authors]
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components:
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<a href="https://chatgpt.com/g/g-M4UNLwFi5-amr-for-r-assistant"><img src="AMRforRGPT.svg" style="min-width: 300px; width: 10%;" /></a>
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gpthelp: '<a target="_blank" href="https://chatgpt.com/g/g-M4UNLwFi5-amr-for-r-assistant"><img src="https://github.com/msberends/AMR/raw/main/pkgdown/assets/AMRforRGPT.svg" style="width: 80%;"></a>'
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navbar:
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title: "AMR (for R)"
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echo -e "\n\n" >> "$output_file"
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done
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# Process important metadata files (DESCRIPTION, NAMESPACE, README.md)
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for file in ../DESCRIPTION ../NAMESPACE ../README.md; do
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# Process important metadata files (DESCRIPTION, NAMESPACE, index.md)
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for file in ../DESCRIPTION ../NAMESPACE ../index.md; do
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if [[ -f $file ]]; then
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echo "THE NEXT PART CONTAINS CONTENTS FROM FILE $file" >> "$output_file"
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echo -e "\n\n" >> "$output_file"
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THE NEXT PART CONTAINS CONTENTS FROM FILE ../README.md
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THE NEXT PART CONTAINS CONTENTS FROM FILE ../index.md
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# `AMR` (for R)
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# The `AMR` Package for R <a href="https://msberends.github.io/AMR/"><img src="./logo.svg" align="right" height="139" /></a>
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<a href="https://msberends.github.io/AMR/"><img src="https://msberends.github.io/AMR/AMR_intro.png" align="center"></a>
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* Provides an **all-in-one solution** for antimicrobial resistance (AMR) data analysis in a One Health approach
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* Used in over 175 countries, available in 20 languages
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* Generates **antibiograms** - traditional, combined, syndromic, and even WISCA
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* Provides the **full microbiological taxonomy** and extensive info on **all antimicrobial drugs**
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* Applies all recent **CLSI** and **EUCAST** clinical and veterinary breakpoints for MICs, disk zones and ECOFFs
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* Corrects for duplicate isolates, **calculates** and **predicts** AMR per antibiotic class
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* Integrates with **WHONET**, ATC, **EARS-Net**, PubChem, **LOINC**, **SNOMED CT**, and **NCBI**
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* 100% free of costs and dependencies, highly suitable for places with **limited resources**
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<div style="display: flex; font-size: 0.8em;">
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<p style="text-align:left; width: 50%;"><small><a href="https://msberends.github.io/AMR/">https://msberends.github.io/AMR</a></small></p>
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<p style="text-align:right; width: 50%;"><small><a href="https://doi.org/10.18637/jss.v104.i03" target="_blank">https://doi.org/10.18637/jss.v104.i03</a></small></p>
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</div>
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<a href="./reference/clinical_breakpoints.html#response-from-clsi-and-eucast"><img src="./endorsement_clsi_eucast.jpg" class="endorse_img" align="right" height="120" /></a>
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----
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`AMR` is a free, open-source and independent R package to simplify the analysis and prediction of Antimicrobial Resistance (AMR) and to work with microbial and antimicrobial data and properties, by using evidence-based methods. Our aim is to provide a standard for clean and reproducible antimicrobial resistance data analysis, that can therefore empower epidemiological analyses to continuously enable surveillance and treatment evaluation in any setting. It is currently being used in over 175 countries. This work was published in the Journal of Statistical Software (2022, Volume 104(3); [DOI 10.18637/jss.v104.i03](https://doi.org/10.18637/jss.v104.i03)) and formed the basis of two PhD theses ([DOI 10.33612/diss.177417131](https://doi.org/10.33612/diss.177417131) and [DOI 10.33612/diss.192486375](https://doi.org/10.33612/diss.192486375)).
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### Introduction
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After installing this package, R knows ~52,000 distinct microbial species and all ~600 antibiotic, antimycotic, and antiviral drugs by name and code (including ATC, WHONET/EARS-Net, PubChem, LOINC and SNOMED CT), and knows all about valid SIR and MIC values. It supports any data format, including WHONET/EARS-Net data. Antimicrobial names and group names are available in English, Chinese, Danish, Dutch, French, German, Greek, Italian, Japanese, Polish, Portuguese, Russian, Spanish, Swedish, Turkish, and Ukrainian.
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The `AMR` package is a [free and open-source](#copyright) R package with [zero dependencies](https://en.wikipedia.org/wiki/Dependency_hell) to simplify the analysis and prediction of Antimicrobial Resistance (AMR) and to work with microbial and antimicrobial data and properties, by using evidence-based methods. **Our aim is to provide a standard** for clean and reproducible AMR data analysis, that can therefore empower epidemiological analyses to continuously enable surveillance and treatment evaluation in any setting. [Many different researchers](./authors.html) from around the globe are continually helping us to make this a successful and durable project!
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This package is fully independent of any other R package and works on Windows, macOS and Linux with all versions of R since R-3.0.0 (April 2013). It was designed to work in any setting, including those with very limited resources. It was created for both routine data analysis and academic research at the Faculty of Medical Sciences of the University of Groningen, in collaboration with non-profit organisations Certe Medical Diagnostics and Advice Foundation and University Medical Center Groningen. This R package is actively maintained and free software; you can freely use and distribute it for both personal and commercial (but not patent) purposes under the terms of the GNU General Public License version 2.0 (GPL-2), as published by the Free Software Foundation.
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This work was published in the Journal of Statistical Software (Volume 104(3); [DOI 10.18637/jss.v104.i03](https://doi.org/10.18637/jss.v104.i03)) and formed the basis of two PhD theses ([DOI 10.33612/diss.177417131](https://doi.org/10.33612/diss.177417131) and [DOI 10.33612/diss.192486375](https://doi.org/10.33612/diss.192486375)).
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This is the development source of the `AMR` package for R. Not a developer? Then please visit our website [https://msberends.github.io/AMR/](https://msberends.github.io/AMR/) to read more about this package.
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After installing this package, R knows [**~52,000 distinct microbial species**](./reference/microorganisms.html) (updated December 2022) and all [**~600 antibiotic, antimycotic and antiviral drugs**](./reference/antibiotics.html) by name and code (including ATC, EARS-Net, ASIARS-Net, PubChem, LOINC and SNOMED CT), and knows all about valid SIR and MIC values. The integral clinical breakpoint guidelines from CLSI and EUCAST are included, even with epidemiological cut-off (ECOFF) values. It supports and can read any data format, including WHONET data. This package works on Windows, macOS and Linux with all versions of R since R-3.0 (April 2013). **It was designed to work in any setting, including those with very limited resources**. It was created for both routine data analysis and academic research at the Faculty of Medical Sciences of the [University of Groningen](https://www.rug.nl), in collaboration with non-profit organisations [Certe Medical Diagnostics and Advice Foundation](https://www.certe.nl) and [University Medical Center Groningen](https://www.umcg.nl).
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*NOTE: this source code is on GitHub (https://github.com/msberends/AMR), but also automatically mirrored to our university's Gitea server (https://git.web.rug.nl/P281424/AMR) and to GitLab (https://gitlab.com/msberends/AMR).*
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##### Used in over 175 countries, available in 20 languages
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### How to get this package
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Please see [our website](https://msberends.github.io/AMR/#get-this-package).
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<a href="./countries_large.png" target="_blank"><img src="./countries.png" align="right" style="max-width: 300px;" /></a>
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You can install or update the `AMR` package from CRAN using:
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Since its first public release in early 2018, this R package has been used in almost all countries in the world. Click the map to enlarge and to see the country names.
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With the help of contributors from all corners of the world, the `AMR` package is available in <img src="lang_en.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> English, <img src="lang_cs.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Czech, <img src="lang_zh.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Chinese, <img src="lang_da.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Danish, <img src="lang_nl.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Dutch, <img src="lang_fi.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Finnish, <img src="lang_fr.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> French, <img src="lang_de.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> German, <img src="lang_el.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Greek, <img src="lang_it.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Italian, <img src="lang_ja.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Japanese, <img src="lang_no.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Norwegian, <img src="lang_pl.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Polish, <img src="lang_pt.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Portuguese, <img src="lang_ro.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Romanian, <img src="lang_ru.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Russian, <img src="lang_es.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Spanish, <img src="lang_sv.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Swedish, <img src="lang_tr.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Turkish, and <img src="lang_uk.svg" style="height: 13px !important; border: 1px solid #cccccc; vertical-align: initial !important;"> Ukrainian. Antimicrobial drug (group) names and colloquial microorganism names are provided in these languages.
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### Practical examples
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#### Filtering and selecting data
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One of the most powerful functions of this package, aside from calculating and plotting AMR, is selecting and filtering based on antibiotic columns. This can be done using the so-called [antibiotic class selectors](https://msberends.github.io/AMR/reference/antibiotic_class_selectors.html) that work in base R, `dplyr` and `data.table`:
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```r
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# AMR works great with dplyr, but it's not required or neccesary
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library(AMR)
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library(dplyr)
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example_isolates %>%
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mutate(bacteria = mo_fullname()) %>%
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# filtering functions for microorganisms:
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filter(mo_is_gram_negative(),
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mo_is_intrinsic_resistant(ab = "cefotax")) %>%
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# antibiotic selectors:
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select(bacteria,
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aminoglycosides(),
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carbapenems())
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```
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With only having defined a row filter on Gram-negative bacteria with intrinsic resistance to cefotaxime (`mo_is_gram_negative()` and `mo_is_intrinsic_resistant()`) and a column selection on two antibiotic groups (`aminoglycosides()` and `carbapenems()`), the reference data about [all microorganisms](./reference/microorganisms.html) and [all antibiotics](./reference/antibiotics.html) in the `AMR` package make sure you get what you meant:
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|bacteria | GEN | TOB | AMK | KAN | IPM | MEM |
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|:------------------------------|:---:|:---:|:---:|:---:|:---:|:---:|
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|*Pseudomonas aeruginosa* | I | S | | R | S | |
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|*Pseudomonas aeruginosa* | I | S | | R | S | |
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|*Pseudomonas aeruginosa* | I | S | | R | S | |
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|*Pseudomonas aeruginosa* | S | S | S | R | | S |
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|*Pseudomonas aeruginosa* | S | S | S | R | S | S |
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|*Pseudomonas aeruginosa* | S | S | S | R | S | S |
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|*Stenotrophomonas maltophilia* | R | R | R | R | R | R |
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|*Pseudomonas aeruginosa* | S | S | S | R | | S |
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|*Pseudomonas aeruginosa* | S | S | S | R | | S |
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|*Pseudomonas aeruginosa* | S | S | S | R | S | S |
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A base R equivalent would be:
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```r
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library(AMR)
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example_isolates$bacteria <- mo_fullname(example_isolates$mo)
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example_isolates[which(mo_is_gram_negative() &
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mo_is_intrinsic_resistant(ab = "cefotax")),
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c("bacteria", aminoglycosides(), carbapenems())]
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```
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This base R code will work in any version of R since April 2013 (R-3.0). Moreover, this code works identically with the `data.table` package, only by starting with:
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```r
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example_isolates <- data.table::as.data.table(example_isolates)
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```
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#### Generating antibiograms
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The `AMR` package supports generating traditional, combined, syndromic, and even weighted-incidence syndromic combination antibiograms (WISCA).
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If used inside R Markdown or Quarto, the table will be printed in the right output format automatically (such as markdown, LaTeX, HTML, etc.).
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```r
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antibiogram(example_isolates,
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antibiotics = c(aminoglycosides(), carbapenems()))
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```
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| Pathogen | Amikacin | Gentamicin | Imipenem | Kanamycin | Meropenem | Tobramycin |
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|:------------------------|:----------------:|:---------------:|:----------------:|:----------------:|:----------------:|:----------------:|
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| CoNS | 0% (0/43) | 86% (267/309) | 52% (25/48) | 0% (0/43) | 52% (25/48) | 22% (12/55) |
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| *E. coli* | 100% (171/171) | 98% (451/460) | 100% (422/422) | | 100% (418/418) | 97% (450/462) |
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| *E. faecalis* | 0% (0/39) | 0% (0/39) | 100% (38/38) | 0% (0/39) | | 0% (0/39) |
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| *K. pneumoniae* | | 90% (52/58) | 100% (51/51) | | 100% (53/53) | 90% (52/58) |
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| *P. aeruginosa* | | 100% (30/30) | | 0% (0/30) | | 100% (30/30) |
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| *P. mirabilis* | | 94% (32/34) | 94% (30/32) | | | 94% (32/34) |
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| *S. aureus* | | 99% (231/233) | | | | 98% (84/86) |
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| *S. epidermidis* | 0% (0/44) | 79% (128/163) | | 0% (0/44) | | 51% (45/89) |
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| *S. hominis* | | 92% (74/80) | | | | 85% (53/62) |
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| *S. pneumoniae* | 0% (0/117) | 0% (0/117) | | 0% (0/117) | | 0% (0/117) |
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In combination antibiograms, it is clear that combined antibiotics yield higher empiric coverage:
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```r
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antibiogram(example_isolates,
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antibiotics = c("TZP", "TZP+TOB", "TZP+GEN"),
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mo_transform = "gramstain")
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```
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| Pathogen | Piperacillin/tazobactam | Piperacillin/tazobactam + Gentamicin | Piperacillin/tazobactam + Tobramycin |
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|:--------------|:-----------------------:|:-------------------------------------:|:------------------------------------:|
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| Gram-negative | 88% (565/641) | 99% (681/691) | 98% (679/693) |
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| Gram-positive | 86% (296/345) | 98% (1018/1044) | 95% (524/550) |
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Like many other functions in this package, `antibiogram()` comes with support for 20 languages that are often detected automatically based on system language:
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```r
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antibiogram(example_isolates,
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antibiotics = c("cipro", "tobra", "genta"), # any arbitrary name or code will work
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mo_transform = "gramstain",
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ab_transform = "name",
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language = "uk") # Ukrainian
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```
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| Збудник | Гентаміцин | Тобраміцин | Ципрофлоксацин |
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|:---------------|:--------------------:|:-------------------:|:------------------:|
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| Грамнегативні | 96% (659/684) | 96% (658/686) | 91% (621/684) |
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| Грампозитивні | 63% (740/1170) | 34% (228/665) | 77% (560/724) |
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#### Calculating resistance per group
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For a manual approach, you can use the `resistance` or `susceptibility()` function:
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```r
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example_isolates %>%
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# group by ward:
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group_by(ward) %>%
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# calculate AMR using resistance() for gentamicin and tobramycin
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# and get their 95% confidence intervals using sir_confidence_interval():
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summarise(across(c(GEN, TOB),
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list(total_R = resistance,
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conf_int = function(x) sir_confidence_interval(x, collapse = "-"))))
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```
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|ward | GEN_total_R|GEN_conf_int | TOB_total_R|TOB_conf_int |
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|:---------:|:----------:|:-----------:|:----------:|:-----------:|
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|Clinical | 0.229 |0.205-0.254 | 0.315 |0.284-0.347 |
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|ICU | 0.290 |0.253-0.330 | 0.400 |0.353-0.449 |
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|Outpatient | 0.200 |0.131-0.285 | 0.368 |0.254-0.493 |
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Or use [antibiotic class selectors](https://msberends.github.io/AMR/reference/antibiotic_class_selectors.html) to select a series of antibiotic columns:
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```r
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library(AMR)
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library(dplyr)
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out <- example_isolates %>%
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# group by ward:
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group_by(ward) %>%
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# calculate AMR using resistance(), over all aminoglycosides and polymyxins:
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summarise(across(c(aminoglycosides(), polymyxins()),
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resistance))
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out
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```
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| ward | GEN | TOB | AMK | KAN | COL |
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|:-----------|------:|------:|------:|------:|------:|
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| Clinical | 0.229 | 0.315 | 0.626 | 1 | 0.780 |
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| ICU | 0.290 | 0.400 | 0.662 | 1 | 0.857 |
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| Outpatient | 0.200 | 0.368 | 0.605 | | 0.889 |
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```r
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# transform the antibiotic columns to names:
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out %>% set_ab_names()
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```
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| ward | gentamicin | tobramycin | amikacin | kanamycin | colistin |
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|:-----------|-----------:|-----------:|----------|----------:|----------:|
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| Clinical | 0.229 | 0.315 | 0.626 | 1 | 0.780 |
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| ICU | 0.290 | 0.400 | 0.662 | 1 | 0.857 |
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| Outpatient | 0.200 | 0.368 | 0.605 | | 0.889 |
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```r
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# transform the antibiotic column to ATC codes:
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out %>% set_ab_names(property = "atc")
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```
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| ward | J01GB03 | J01GB01 | J01GB06 | J01GB04 | J01XB01 |
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|:-----------|-----------:|-----------:|----------|----------:|----------:|
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| Clinical | 0.229 | 0.315 | 0.626 | 1 | 0.780 |
|
||||
| ICU | 0.290 | 0.400 | 0.662 | 1 | 0.857 |
|
||||
| Outpatient | 0.200 | 0.368 | 0.605 | | 0.889 |
|
||||
|
||||
### What else can you do with this package?
|
||||
|
||||
This package was intended as a comprehensive toolbox for integrated AMR data analysis. This package can be used for:
|
||||
|
||||
* Reference for the taxonomy of microorganisms, since the package contains all microbial (sub)species from the List of Prokaryotic names with Standing in Nomenclature ([LPSN]((https://lpsn.dsmz.de))) and the Global Biodiversity Information Facility ([GBIF](https://www.gbif.org)) ([manual](./reference/mo_property.html))
|
||||
* Interpreting raw MIC and disk diffusion values, based on any CLSI or EUCAST guideline ([manual](./reference/as.sir.html))
|
||||
* Retrieving antimicrobial drug names, doses and forms of administration from clinical health care records ([manual](./reference/ab_from_text.html))
|
||||
* Determining first isolates to be used for AMR data analysis ([manual](./reference/first_isolate.html))
|
||||
* Calculating antimicrobial resistance ([tutorial](./articles/AMR.html))
|
||||
* Determining multi-drug resistance (MDR) / multi-drug resistant organisms (MDRO) ([tutorial](./articles/MDR.html))
|
||||
* Calculating (empirical) susceptibility of both mono therapy and combination therapies ([tutorial](./articles/AMR.html))
|
||||
* Predicting future antimicrobial resistance using regression models ([tutorial](./articles/resistance_predict.html))
|
||||
* Getting properties for any microorganism (like Gram stain, species, genus or family) ([manual](./reference/mo_property.html))
|
||||
* Getting properties for any antibiotic (like name, code of EARS-Net/ATC/LOINC/PubChem, defined daily dose or trade name) ([manual](./reference/ab_property.html))
|
||||
* Plotting antimicrobial resistance ([tutorial](./articles/AMR.html))
|
||||
* Applying EUCAST expert rules ([manual](./reference/eucast_rules.html))
|
||||
* Getting SNOMED codes of a microorganism, or getting properties of a microorganism based on a SNOMED code ([manual](./reference/mo_property.html))
|
||||
* Getting LOINC codes of an antibiotic, or getting properties of an antibiotic based on a LOINC code ([manual](./reference/ab_property.html))
|
||||
* Machine reading the EUCAST and CLSI guidelines from 2011-2021 to translate MIC values and disk diffusion diameters to SIR ([link](./articles/datasets.html))
|
||||
* Principal component analysis for AMR ([tutorial](./articles/PCA.html))
|
||||
|
||||
### Get this package
|
||||
|
||||
#### Latest official version
|
||||
|
||||
[](https://cran.r-project.org/package=AMR)
|
||||
[](https://cran.r-project.org/package=AMR)
|
||||
|
||||
This package is available [here on the official R network (CRAN)](https://cran.r-project.org/package=AMR). Install this package in R from CRAN by using the command:
|
||||
|
||||
```r
|
||||
install.packages("AMR")
|
||||
@@ -26447,11 +26661,74 @@ install.packages("AMR")
|
||||
|
||||
It will be downloaded and installed automatically. For RStudio, click on the menu *Tools* > *Install Packages...* and then type in "AMR" and press <kbd>Install</kbd>.
|
||||
|
||||
----
|
||||
**Note:** Not all functions on this website may be available in this latest release. To use all functions and data sets mentioned on this website, install the latest development version.
|
||||
|
||||
<small>
|
||||
This AMR package for R is free, open-source software and licensed under the [GNU General Public License v2.0 (GPL-2)](https://msberends.github.io/AMR/LICENSE-text.html). These requirements are consequently legally binding: modifications must be released under the same license when distributing the package, changes made to the code must be documented, source code must be made available when the package is distributed, and a copy of the license and copyright notice must be included with the package.
|
||||
</small>
|
||||
#### Latest development version
|
||||
|
||||
[](https://github.com/msberends/AMR/actions/workflows/check-old.yaml?query=branch%3Amain)
|
||||
[](https://github.com/msberends/AMR/actions/workflows/check-recent.yaml?query=branch%3Amain)
|
||||
[](https://www.codefactor.io/repository/github/msberends/amr)
|
||||
[](https://codecov.io/gh/msberends/AMR?branch=main)
|
||||
|
||||
Please read our [Developer Guideline here](https://github.com/msberends/AMR/wiki/Developer-Guideline).
|
||||
|
||||
The latest and unpublished development version can be installed from GitHub in two ways:
|
||||
|
||||
1. Manually, using:
|
||||
|
||||
```r
|
||||
install.packages("remotes") # if you haven't already
|
||||
remotes::install_github("msberends/AMR")
|
||||
```
|
||||
|
||||
2. Automatically, using the [rOpenSci R-universe platform](https://ropensci.org/r-universe/), by adding [our R-universe address](https://msberends.r-universe.dev) to your list of repositories ('repos'):
|
||||
|
||||
```r
|
||||
options(repos = c(getOption("repos"),
|
||||
msberends = "https://msberends.r-universe.dev"))
|
||||
```
|
||||
|
||||
After this, you can install and update this `AMR` package like any official release (e.g., using `install.packages("AMR")` or in RStudio via *Tools* > *Check for Package Updates...*).
|
||||
|
||||
### Get started
|
||||
|
||||
To find out how to conduct AMR data analysis, please [continue reading here to get started](./articles/AMR.html) or click a link in the ['How to' menu](https://msberends.github.io/AMR/articles/).
|
||||
|
||||
### Partners
|
||||
|
||||
The development of this package is part of, related to, or made possible by the following non-profit organisations and initiatives:
|
||||
|
||||
<div align="center">
|
||||
<a href="https://www.rug.nl" title="University of Groningen"><img src="./logo_rug.svg" style="max-width: 200px;"></a>
|
||||
<a href="https://www.umcg.nl" title="University Medical Center Groningen"><img src="./logo_umcg.svg" style="max-width: 200px;"></a>
|
||||
<a href="https://www.certe.nl" title="Certe Medical Diagnostics and Advice Foundation"><img src="./logo_certe.svg" style="max-width: 200px;"></a>
|
||||
<a href="https://www.deutschland-nederland.eu" title="EurHealth-1-Health"><img src="./logo_eh1h.png" style="max-width: 200px;"></a>
|
||||
<a href="https://www.deutschland-nederland.eu" title="INTERREG"><img src="./logo_interreg.png" style="max-width: 200px;"></a>
|
||||
</div>
|
||||
|
||||
### Copyright
|
||||
|
||||
This R package is free, open-source software and licensed under the [GNU General Public License v2.0 (GPL-2)](./LICENSE-text.html). In a nutshell, this means that this package:
|
||||
|
||||
- May be used for commercial purposes
|
||||
|
||||
- May be used for private purposes
|
||||
|
||||
- May **not** be used for patent purposes
|
||||
|
||||
- May be modified, although:
|
||||
|
||||
- Modifications **must** be released under the same license when distributing the package
|
||||
- Changes made to the code **must** be documented
|
||||
|
||||
- May be distributed, although:
|
||||
|
||||
- Source code **must** be made available when the package is distributed
|
||||
- A copy of the license and copyright notice **must** be included with the package.
|
||||
|
||||
- Comes with a LIMITATION of liability
|
||||
|
||||
- Comes with NO warranty
|
||||
|
||||
|
||||
|
||||
|
||||
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|
||||
f38201f0751cfc3a0993dcf9141609a1
|
||||
eb00595a506d917ec1f00688c2cc41cf
|
||||
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+209
-209
@@ -14908,34 +14908,34 @@
|
||||
"B_CTRFR_BMDJ" "Citrifermentans bemidjiense" "synonym" "Bacteria" "Pseudomonadota" "Deltaproteobacteria" "Desulfuromonadales" "Geobacteraceae" "Citrifermentans" "bemidjiense" "" "species" "Waite et al., 2020" "LPSN" "17441" "17393" "5963" 2 ""
|
||||
"B_CTRFR_BRMN" "Citrifermentans bremense" "synonym" "Bacteria" "Pseudomonadota" "Deltaproteobacteria" "Desulfuromonadales" "Geobacteraceae" "Citrifermentans" "bremense" "" "species" "Waite et al., 2020" "LPSN" "17472" "17393" "5553" 2 ""
|
||||
"B_CTRFR_PLPH" "Citrifermentans pelophilum" "synonym" "Bacteria" "Pseudomonadota" "Deltaproteobacteria" "Desulfuromonadales" "Geobacteraceae" "Citrifermentans" "pelophilum" "" "species" "Waite et al., 2020" "LPSN" "17473" "17393" "26728" 2 ""
|
||||
"B_CTRBC" "Citrobacter" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "" "" "genus" "Werkman et al., 1932" "facultative anaerobe" "LPSN" "515376" "482" "3221778" "11158430" "3221787" 1.15 "1089501000112101,75972000"
|
||||
"B_CTRBC_AMLNT" "Citrobacter amalonatica" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "amalonatica" "" "species" "Young et al., 1971" "likely facultative anaerobe" "GBIF" "515376" "5427576" "3221778" "3221795" 1.15 ""
|
||||
"B_CTRBC_AMLN" "Citrobacter amalonaticus" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "amalonaticus" "" "species" "Brenner et al., 1982" "facultative anaerobe" "LPSN" "774743" "515376" "3221795" "3221778" 1.15 "1089101000112105,55744003"
|
||||
"B_CTRBC_AMLN-C" "Citrobacter amalonaticus complex" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "amalonaticus complex" "" "species group" "facultative anaerobe" "manually added" "482" "11158430" 2 ""
|
||||
"B_CTRBC_BTTR" "Citrobacter bitternis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "bitternis" "" "species" "Ko et al., 2015" "likely facultative anaerobe" "GBIF" "515376" "11113073" "3221778" 1.5 ""
|
||||
"B_CTRBC_BRAK" "Citrobacter braakii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "braakii" "" "species" "Brenner et al., 1993" "facultative anaerobe" "LPSN" "774744" "515376" "3221791" "3221778" 1.15 "1089301000112107,114262000"
|
||||
"B_CTRBC_CRON" "Citrobacter cronae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "cronae" "" "species" "Oberhettinger et al., 2020" "likely facultative anaerobe" "LPSN" "7473" "515376" "11248376" "3221778" "3221797" 1.15 ""
|
||||
"B_CTRBC_DVRS" "Citrobacter diversum" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "diversum" "" "species" "Werkman et al., 1932" "likely facultative anaerobe" "LPSN" "16504" "515376" "774745" "3221778" 1.5 ""
|
||||
"B_CTRBC_VRSS" "Citrobacter diversus" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "diversus" "" "species" "Werkman et al., 1932" "likely facultative anaerobe" "LPSN" "774745" "515376" "774752" "3221789" "3221778" "3221790" 1.15 ""
|
||||
"B_CTRBC_ENSH" "Citrobacter enshiensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "enshiensis" "" "species" "Zhang et al., 2024" "likely facultative anaerobe" "LPSN" "43232" "515376" "3221778" 1.5 ""
|
||||
"B_CTRBC_ERPS" "Citrobacter europaeus" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "europaeus" "" "species" "Ribeiro et al., 2017" "facultative anaerobe" "LPSN" "795042" "515376" "9554238" "3221778" 1.5 ""
|
||||
"B_CTRBC_FRMR" "Citrobacter farmeri" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "farmeri" "" "species" "Brenner et al., 1993" "facultative anaerobe" "LPSN" "774746" "515376" "3221799" "3221778" 1.15 "1089701000112106,114263005"
|
||||
"B_CTRBC_FRND" "Citrobacter freundii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "freundii" "" "species" "Werkman et al., 1932" "facultative anaerobe" "LPSN" "774747" "515376" "10732598" "3221778" 1.15 "1089901000112108,6265002,721909006,715206000"
|
||||
"B_CTRBC_FRND-C" "Citrobacter freundii complex" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "freundii complex" "" "species group" "facultative anaerobe" "manually added" "482" "11158430" 2 ""
|
||||
"B_CTRBC_GLLN" "Citrobacter gillenii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "gillenii" "" "species" "Brenner et al., 2000" "aerobe" "LPSN" "774750" "515376" "3221794" "3221778" 1.5 "416990006"
|
||||
"B_CTRBC_KOSR" "Citrobacter koseri" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "koseri" "" "species" "Frederiksen, 1970" "facultative anaerobe" "LPSN" "774752" "515376" "3221790" "3221778" 1.15 "1090401000112109,114264004"
|
||||
"B_CTRBC_MLNT" "Citrobacter malonatica" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "malonatica" "" "species" "Young et al., 1971" "likely facultative anaerobe" "GBIF" "515376" "5427569" "3221778" "3221790" 1.15 ""
|
||||
"B_CTRBC_MRDN" "Citrobacter meridianamericanus" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "meridianamericanus" "" "species" "Furlan et al., 2023" "likely facultative anaerobe" "LPSN" "37151" "515376" "3221778" 1.5 ""
|
||||
"B_CTRBC_MRLN" "Citrobacter murliniae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "murliniae" "" "species" "Brenner et al., 2000" "facultative anaerobe" "LPSN" "774753" "515376" "3221788" "3221778" 1.5 "417581000"
|
||||
"B_CTRBC_PSTR" "Citrobacter pasteurii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "pasteurii" "" "species" "Clermont et al., 2015" "facultative anaerobe" "LPSN" "792820" "515376" "7600571" "3221778" "3221792" 1.15 ""
|
||||
"B_CTRBC_PRTC" "Citrobacter portucalensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "portucalensis" "" "species" "Ribeiro et al., 2017" "facultative anaerobe" "LPSN" "795907" "515376" "9769073" "3221778" 1.5 ""
|
||||
"B_CTRBC_RDNT" "Citrobacter rodentium" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "rodentium" "" "species" "Schauer et al., 1996" "facultative anaerobe" "LPSN" "774754" "515376" "3221798" "3221778" 1.15 "114444007"
|
||||
"B_CTRBC_SDLK" "Citrobacter sedlakii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "sedlakii" "" "species" "Brenner et al., 1993" "facultative anaerobe" "LPSN" "774755" "515376" "3221793" "3221778" 1.15 "114265003"
|
||||
"B_CTRBC_TLVV" "Citrobacter telavivensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "telavivensis" "" "species" "Ribeiro et al., 2021" "likely facultative anaerobe" "LPSN" "19552" "515376" "3221778" 1.5 ""
|
||||
"B_CTRBC_LVVM" "Citrobacter telavivum" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "telavivum" "" "species" "Ribeiro et al., 2021" "likely facultative anaerobe" "LPSN" "14573" "515376" "19552" "3221778" 1.5 ""
|
||||
"B_CTRBC_TRCT" "Citrobacter tructae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "tructae" "" "species" "likely facultative anaerobe" "GBIF" "515376" "11633032" "3221778" 1.5 ""
|
||||
"B_CTRBC_WRKM" "Citrobacter werkmanii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "werkmanii" "" "species" "Brenner et al., 1993" "facultative anaerobe" "LPSN" "774757" "515376" "3221797" "3221778" 1.15 "1091201000112104,114442006"
|
||||
"B_CTRBC_YONG" "Citrobacter youngae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "youngae" "" "species" "Brenner et al., 1993" "facultative anaerobe" "LPSN" "774758" "515376" "3221792" "3221778" 1.15 "1091401000112100,114443001"
|
||||
"B_CTRBC" "Citrobacter" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "" "" "genus" "Werkman et al., 1932" "facultative anaerobe" "LPSN" "515376" "482" "3221778" "11158430" "3221787" 1 "1089501000112101,75972000"
|
||||
"B_CTRBC_AMLNT" "Citrobacter amalonatica" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "amalonatica" "" "species" "Young et al., 1971" "likely facultative anaerobe" "GBIF" "515376" "5427576" "3221778" "3221795" 1 ""
|
||||
"B_CTRBC_AMLN" "Citrobacter amalonaticus" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "amalonaticus" "" "species" "Brenner et al., 1982" "facultative anaerobe" "LPSN" "774743" "515376" "3221795" "3221778" 1 "1089101000112105,55744003"
|
||||
"B_CTRBC_AMLN-C" "Citrobacter amalonaticus complex" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "amalonaticus complex" "" "species group" "facultative anaerobe" "manually added" "482" "11158430" 1 ""
|
||||
"B_CTRBC_BTTR" "Citrobacter bitternis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "bitternis" "" "species" "Ko et al., 2015" "likely facultative anaerobe" "GBIF" "515376" "11113073" "3221778" 1 ""
|
||||
"B_CTRBC_BRAK" "Citrobacter braakii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "braakii" "" "species" "Brenner et al., 1993" "facultative anaerobe" "LPSN" "774744" "515376" "3221791" "3221778" 1 "1089301000112107,114262000"
|
||||
"B_CTRBC_CRON" "Citrobacter cronae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "cronae" "" "species" "Oberhettinger et al., 2020" "likely facultative anaerobe" "LPSN" "7473" "515376" "11248376" "3221778" "3221797" 1 ""
|
||||
"B_CTRBC_DVRS" "Citrobacter diversum" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "diversum" "" "species" "Werkman et al., 1932" "likely facultative anaerobe" "LPSN" "16504" "515376" "774745" "3221778" 1 ""
|
||||
"B_CTRBC_VRSS" "Citrobacter diversus" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "diversus" "" "species" "Werkman et al., 1932" "likely facultative anaerobe" "LPSN" "774745" "515376" "774752" "3221789" "3221778" "3221790" 1 ""
|
||||
"B_CTRBC_ENSH" "Citrobacter enshiensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "enshiensis" "" "species" "Zhang et al., 2024" "likely facultative anaerobe" "LPSN" "43232" "515376" "3221778" 1 ""
|
||||
"B_CTRBC_ERPS" "Citrobacter europaeus" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "europaeus" "" "species" "Ribeiro et al., 2017" "facultative anaerobe" "LPSN" "795042" "515376" "9554238" "3221778" 1 ""
|
||||
"B_CTRBC_FRMR" "Citrobacter farmeri" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "farmeri" "" "species" "Brenner et al., 1993" "facultative anaerobe" "LPSN" "774746" "515376" "3221799" "3221778" 1 "1089701000112106,114263005"
|
||||
"B_CTRBC_FRND" "Citrobacter freundii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "freundii" "" "species" "Werkman et al., 1932" "facultative anaerobe" "LPSN" "774747" "515376" "10732598" "3221778" 1 "1089901000112108,6265002,721909006,715206000"
|
||||
"B_CTRBC_FRND-C" "Citrobacter freundii complex" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "freundii complex" "" "species group" "facultative anaerobe" "manually added" "482" "11158430" 1 ""
|
||||
"B_CTRBC_GLLN" "Citrobacter gillenii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "gillenii" "" "species" "Brenner et al., 2000" "aerobe" "LPSN" "774750" "515376" "3221794" "3221778" 1 "416990006"
|
||||
"B_CTRBC_KOSR" "Citrobacter koseri" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "koseri" "" "species" "Frederiksen, 1970" "facultative anaerobe" "LPSN" "774752" "515376" "3221790" "3221778" 1 "1090401000112109,114264004"
|
||||
"B_CTRBC_MLNT" "Citrobacter malonatica" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "malonatica" "" "species" "Young et al., 1971" "likely facultative anaerobe" "GBIF" "515376" "5427569" "3221778" "3221790" 1 ""
|
||||
"B_CTRBC_MRDN" "Citrobacter meridianamericanus" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "meridianamericanus" "" "species" "Furlan et al., 2023" "likely facultative anaerobe" "LPSN" "37151" "515376" "3221778" 1 ""
|
||||
"B_CTRBC_MRLN" "Citrobacter murliniae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "murliniae" "" "species" "Brenner et al., 2000" "facultative anaerobe" "LPSN" "774753" "515376" "3221788" "3221778" 1 "417581000"
|
||||
"B_CTRBC_PSTR" "Citrobacter pasteurii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "pasteurii" "" "species" "Clermont et al., 2015" "facultative anaerobe" "LPSN" "792820" "515376" "7600571" "3221778" "3221792" 1 ""
|
||||
"B_CTRBC_PRTC" "Citrobacter portucalensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "portucalensis" "" "species" "Ribeiro et al., 2017" "facultative anaerobe" "LPSN" "795907" "515376" "9769073" "3221778" 1 ""
|
||||
"B_CTRBC_RDNT" "Citrobacter rodentium" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "rodentium" "" "species" "Schauer et al., 1996" "facultative anaerobe" "LPSN" "774754" "515376" "3221798" "3221778" 1 "114444007"
|
||||
"B_CTRBC_SDLK" "Citrobacter sedlakii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "sedlakii" "" "species" "Brenner et al., 1993" "facultative anaerobe" "LPSN" "774755" "515376" "3221793" "3221778" 1 "114265003"
|
||||
"B_CTRBC_TLVV" "Citrobacter telavivensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "telavivensis" "" "species" "Ribeiro et al., 2021" "likely facultative anaerobe" "LPSN" "19552" "515376" "3221778" 1 ""
|
||||
"B_CTRBC_LVVM" "Citrobacter telavivum" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "telavivum" "" "species" "Ribeiro et al., 2021" "likely facultative anaerobe" "LPSN" "14573" "515376" "19552" "3221778" 1 ""
|
||||
"B_CTRBC_TRCT" "Citrobacter tructae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "tructae" "" "species" "likely facultative anaerobe" "GBIF" "515376" "11633032" "3221778" 1 ""
|
||||
"B_CTRBC_WRKM" "Citrobacter werkmanii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "werkmanii" "" "species" "Brenner et al., 1993" "facultative anaerobe" "LPSN" "774757" "515376" "3221797" "3221778" 1 "1091201000112104,114442006"
|
||||
"B_CTRBC_YONG" "Citrobacter youngae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Citrobacter" "youngae" "" "species" "Brenner et al., 1993" "facultative anaerobe" "LPSN" "774758" "515376" "3221792" "3221778" 1 "1091401000112100,114443001"
|
||||
"B_CTRMC" "Citromicrobium" "not validly published" "Bacteria" "Pseudomonadota" "Alphaproteobacteria" "Sphingomonadales" "Sphingomonadaceae" "Citromicrobium" "" "" "genus" "Yurkov et al., 1999" "LPSN" "521827" "1302" "5911992" "8926" 2 ""
|
||||
"B_CTRMC_BTHY" "Citromicrobium bathyomarinum" "accepted" "Bacteria" "Pseudomonadota" "Alphaproteobacteria" "Sphingomonadales" "Sphingomonadaceae" "Citromicrobium" "bathyomarinum" "" "species" "Yurkov et al., 1999" "GBIF" "521827" "5911994" "5911992" 2 ""
|
||||
"B_CTRNL" "Citroniella" "accepted" "Bacteria" "Bacillota" "Clostridia" "Eubacteriales" "Peptoniphilaceae" "Citroniella" "" "" "genus" "Patel et al., 2019" "anaerobe" "LPSN" "521793" "1985" "9425668" 2 ""
|
||||
@@ -22639,13 +22639,13 @@
|
||||
"P_EDHZR_AEDS" "Edhazardia aedis" "accepted" "Protozoa" "Microsporidia" "Microsporea" "Meiodihaplophasida" "Amblyosporidae" "Edhazardia" "aedis" "" "species" "Becnel et al., 1989" "GBIF" "7991005" "7512600" 2 ""
|
||||
"B_EDWRDP" "Edwardiiplasma" "not validly published" "Bacteria" "Mycoplasmatota" "Mollicutes" "Mycoplasmatales" "Mycoplasmataceae" "Edwardiiplasma" "" "" "genus" "Gupta et al., 2019" "LPSN" "433" "916" "10878835" "7805" 2 ""
|
||||
"B_EDWRDP_LCTC" "Edwardiiplasma lactucae" "accepted" "Bacteria" "Mycoplasmatota" "Mollicutes" "Mycoplasmatales" "Mycoplasmataceae" "Edwardiiplasma" "lactucae" "" "species" "GBIF" "433" "10703295" "10878835" 2 ""
|
||||
"B_EDWRD" "Edwardsiella" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Hafniaceae" "Edwardsiella" "" "" "genus" "Ewing et al., 1965" "facultative anaerobe" "LPSN" "515566" "2055" "9883095" 1.15 "114447000,14566004"
|
||||
"B_EDWRD_ANGL" "Edwardsiella anguillarum" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Hafniaceae" "Edwardsiella" "anguillarum" "" "species" "Shao et al., 2015" "aerobe" "LPSN" "792974" "515566" "9581273" 1.5 ""
|
||||
"B_EDWRD_TFRA" "Edwardsiella anguillimortifera" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Hafniaceae" "Edwardsiella" "anguillimortifera" "" "species" "Sakazaki et al., 1975" "likely facultative anaerobe" "LPSN" "783754" "515566" "775882" "5427636" "5427639" 1.15 ""
|
||||
"B_EDWRD_HSHN" "Edwardsiella hoshinae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Hafniaceae" "Edwardsiella" "hoshinae" "" "species" "Grimont et al., 1981" "facultative anaerobe" "LPSN" "775880" "515566" "5427637" 1.15 "4280005"
|
||||
"B_EDWRD_ICTL" "Edwardsiella ictaluri" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Hafniaceae" "Edwardsiella" "ictaluri" "" "species" "Hawke et al., 1981" "facultative anaerobe" "LPSN" "775881" "515566" "5427638" 1.5 "68227003"
|
||||
"B_EDWRD_PSCC" "Edwardsiella piscicida" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Hafniaceae" "Edwardsiella" "piscicida" "" "species" "Abayneh et al., 2013" "aerobe" "LPSN" "791058" "515566" "9272078" 1.5 ""
|
||||
"B_EDWRD_TARD" "Edwardsiella tarda" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Hafniaceae" "Edwardsiella" "tarda" "" "species" "Ewing et al., 1965" "facultative anaerobe" "LPSN" "775882" "515566" "5427639" 1.15 "74672006"
|
||||
"B_EDWRD" "Edwardsiella" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Hafniaceae" "Edwardsiella" "" "" "genus" "Ewing et al., 1965" "facultative anaerobe" "LPSN" "515566" "2055" "9883095" 1 "114447000,14566004"
|
||||
"B_EDWRD_ANGL" "Edwardsiella anguillarum" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Hafniaceae" "Edwardsiella" "anguillarum" "" "species" "Shao et al., 2015" "aerobe" "LPSN" "792974" "515566" "9581273" 1 ""
|
||||
"B_EDWRD_TFRA" "Edwardsiella anguillimortifera" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Hafniaceae" "Edwardsiella" "anguillimortifera" "" "species" "Sakazaki et al., 1975" "likely facultative anaerobe" "LPSN" "783754" "515566" "775882" "5427636" "5427639" 1 ""
|
||||
"B_EDWRD_HSHN" "Edwardsiella hoshinae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Hafniaceae" "Edwardsiella" "hoshinae" "" "species" "Grimont et al., 1981" "facultative anaerobe" "LPSN" "775880" "515566" "5427637" 1 "4280005"
|
||||
"B_EDWRD_ICTL" "Edwardsiella ictaluri" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Hafniaceae" "Edwardsiella" "ictaluri" "" "species" "Hawke et al., 1981" "facultative anaerobe" "LPSN" "775881" "515566" "5427638" 1 "68227003"
|
||||
"B_EDWRD_PSCC" "Edwardsiella piscicida" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Hafniaceae" "Edwardsiella" "piscicida" "" "species" "Abayneh et al., 2013" "aerobe" "LPSN" "791058" "515566" "9272078" 1 ""
|
||||
"B_EDWRD_TARD" "Edwardsiella tarda" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Hafniaceae" "Edwardsiella" "tarda" "" "species" "Ewing et al., 1965" "facultative anaerobe" "LPSN" "775882" "515566" "5427639" 1 "74672006"
|
||||
"B_EFFLV" "Effluviibacter" "synonym" "Bacteria" "Bacteroidota" "Cytophagia" "Cytophagales" "Hymenobacteraceae" "Effluviibacter" "" "" "genus" "Suresh et al., 2006" "LPSN" "517225" "2046" "517315" 2 ""
|
||||
"B_EFFLV_ROSS" "Effluviibacter roseus" "synonym" "Bacteria" "Bacteroidota" "Cytophagia" "Cytophagales" "Hymenobacteraceae" "Effluviibacter" "roseus" "" "species" "Suresh et al., 2006" "LPSN" "783755" "517225" "788311" 2 ""
|
||||
"B_[FAM]_EFFSBCLL" "Effusibacillaceae" "accepted" "Bacteria" "Bacillota" "Bacilli" "Tumebacillales" "Effusibacillaceae" "" "" "" "family" "Chuvochina et al., 2024" "LPSN" "43551" "43712" "10803528" "10711916" 2 ""
|
||||
@@ -23076,67 +23076,67 @@
|
||||
"P_ENTRD_ANTR" "Enteridium antarcticum" "accepted" "Protozoa" "Mycetozoa" "Myxomycetes" "Cribrariales" "Tubiferaceae" "Enteridium" "antarcticum" "" "species" "Speg, 1888" "GBIF" "3272971" "9382973" 2 ""
|
||||
"B_ENTRB" "Enterobacillus" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacillus" "" "" "genus" "Patil et al., 2015" "aerobe" "LPSN" "518759" "482" "11158430" 2 ""
|
||||
"B_ENTRB_TRBL" "Enterobacillus tribolii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacillus" "tribolii" "" "species" "Patil et al., 2015" "aerobe" "LPSN" "792987" "518759" "9219517" 2 ""
|
||||
"B_ENTRBC" "Enterobacter" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "" "" "genus" "Brady et al., 2013" "facultative anaerobe" "LPSN" "515587" "482" "4902020" "11158430" "3221976" 1.15 "1093401000112101,58683007"
|
||||
"B_ENTRBC_AERG" "Enterobacter aerogenes" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "aerogenes" "" "species" "Hormaeche et al., 1960" "likely facultative anaerobe" "LPSN" "775928" "515587" "777146" "4902020" 1.15 ""
|
||||
"B_ENTRBC_AGGL" "Enterobacter agglomerans" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "agglomerans" "" "species" "Beji et al., 1988" "likely facultative anaerobe" "LPSN" "775929" "515587" "779135" "4902020" 1.15 ""
|
||||
"B_ENTRBC_AMNG" "Enterobacter amnigenus" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "amnigenus" "" "species" "Izard et al., 1981" "likely facultative anaerobe" "LPSN" "775930" "515587" "791220" "4902020" 1.15 "84221003"
|
||||
"B_ENTRBC_ARCH" "Enterobacter arachidis" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "arachidis" "" "species" "Madhaiyan et al., 2010" "likely facultative anaerobe" "LPSN" "788636" "515587" "791226" "4902020" 1.5 ""
|
||||
"B_ENTRBC_ASBR" "Enterobacter asburiae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "asburiae" "" "species" "Hoffmann et al., 2005" "facultative anaerobe" "LPSN" "775931" "515587" "3221988" "4902020" 1.15 "1093601000112103,33115003,714316001"
|
||||
"B_ENTRBC_BGND" "Enterobacter bugandensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "bugandensis" "" "species" "Doijad et al., 2016" "facultative anaerobe" "LPSN" "793840" "515587" "8768455" "4902020" 1.15 "113611000146106"
|
||||
"B_ENTRBC_CNCRG" "Enterobacter cancerogena" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "cancerogena" "" "species" "Urosevic, 1966" "likely facultative anaerobe" "GBIF" "515587" "3221978" "4902020" "3221977" 1.15 ""
|
||||
"B_ENTRBC_CNCR" "Enterobacter cancerogenus" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "cancerogenus" "" "species" "Dickey et al., 1988" "facultative anaerobe" "LPSN" "775932" "515587" "3221977" "4902020" 1.15 "114451003"
|
||||
"B_ENTRBC_CHNG" "Enterobacter chengduensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "chengduensis" "" "species" "Wu et al., 2019" "likely facultative anaerobe" "LPSN" "801301" "515587" "10744670" "4902020" 1.5 ""
|
||||
"B_ENTRBC_CHND" "Enterobacter chuandaensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "chuandaensis" "" "species" "Wu et al., 2019" "facultative anaerobe" "LPSN" "800158" "515587" "10745032" "4902020" 1.5 ""
|
||||
"B_ENTRBC_CLOC" "Enterobacter cloacae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "cloacae" "" "species" "Hormaeche et al., 1960" "facultative anaerobe" "LPSN" "775933" "515587" "10926827" "4902020" 1.15 "714007005,737529000,14385002,721910001,714317005"
|
||||
"B_ENTRBC_CLOC_CLOC" "Enterobacter cloacae cloacae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "cloacae" "cloacae" "subspecies" "Hoffmann et al., 2005" "LPSN" "775934" "775933" "7234533" "10926827" 1.15 ""
|
||||
"B_ENTRBC_CLOC-C" "Enterobacter cloacae complex" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "cloacae complex" "" "species group" "facultative anaerobe" "manually added" "482" "11158430" 2 ""
|
||||
"B_ENTRBC_CLOC_DSSL" "Enterobacter cloacae dissolvens" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "cloacae" "dissolvens" "subspecies" "Hoffmann et al., 2005" "LPSN" "775935" "775933" "3221982" "10926827" 1.15 ""
|
||||
"B_ENTRBC_COWN" "Enterobacter cowanii" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "cowanii" "" "species" "Inoue et al., 2001" "likely facultative anaerobe" "LPSN" "775936" "515587" "791223" "4902020" 1.15 ""
|
||||
"B_ENTRBC_DSSL" "Enterobacter dissolvens" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "dissolvens" "" "species" "Brenner et al., 1988" "likely facultative anaerobe" "LPSN" "775937" "515587" "775935" "4902020" 1.5 ""
|
||||
"B_ENTRBC_DYKS" "Enterobacter dykesii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "dykesii" "" "species" "Cho et al., 2021" "facultative anaerobe" "LPSN" "20279" "515587" "11517975" "4902020" 1.5 ""
|
||||
"B_ENTRBC_GRGV" "Enterobacter gergoviae" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "gergoviae" "" "species" "Brenner et al., 1980" "likely facultative anaerobe" "LPSN" "775939" "515587" "791221" "4902020" 1.15 ""
|
||||
"B_ENTRBC_HLVT" "Enterobacter helveticus" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "helveticus" "" "species" "Stephan et al., 2007" "likely facultative anaerobe" "LPSN" "775940" "515587" "792220" "4902020" 1.5 ""
|
||||
"B_ENTRBC_HRMC" "Enterobacter hormaechei" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "hormaechei" "" "species" "Hoffmann et al., 2005" "facultative anaerobe" "LPSN" "783768" "515587" "3221997" "4902020" 1.15 "1094301000112105,114454006"
|
||||
"B_ENTRBC_HRMC_HFFM" "Enterobacter hormaechei hoffmannii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "hormaechei" "hoffmannii" "subspecies" "Sutton et al., 2018" "LPSN" "797971" "783768" "3221997" 1.15 ""
|
||||
"B_ENTRBC_HRMC_HRMC" "Enterobacter hormaechei hormaechei" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "hormaechei" "hormaechei" "subspecies" "Hoffmann et al., 2016" "LPSN" "775942" "783768" "9566170" "3221997" 1.15 ""
|
||||
"B_ENTRBC_HRMC_OHAR" "Enterobacter hormaechei oharae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "hormaechei" "oharae" "subspecies" "Hoffmann et al., 2016" "LPSN" "775943" "783768" "9393949" "3221997" 1.15 ""
|
||||
"B_ENTRBC_HRMC_STGR" "Enterobacter hormaechei steigerwaltii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "hormaechei" "steigerwaltii" "subspecies" "Hoffmann et al., 2016" "LPSN" "775944" "783768" "9373068" "3221997" 1.15 ""
|
||||
"B_ENTRBC_HRMC_XNGF" "Enterobacter hormaechei xiangfangensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "hormaechei" "xiangfangensis" "subspecies" "Sutton et al., 2018" "LPSN" "798724" "783768" "3221997" 1.15 ""
|
||||
"B_ENTRBC_HXNS" "Enterobacter huaxiensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "huaxiensis" "" "species" "Wu et al., 2019" "facultative anaerobe" "LPSN" "800159" "515587" "10827626" "4902020" 1.25 ""
|
||||
"B_ENTRBC_INTR" "Enterobacter intermedium" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "intermedium" "" "species" "Izard et al., 1980" "likely facultative anaerobe" "LPSN" "783769" "515587" "775945" "4902020" 1.5 ""
|
||||
"B_ENTRBC_RMDS" "Enterobacter intermedius" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "intermedius" "" "species" "Izard et al., 1980" "likely facultative anaerobe" "LPSN" "775945" "515587" "777172" "4902020" 1.5 ""
|
||||
"B_ENTRBC_KOBE" "Enterobacter kobei" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "kobei" "" "species" "Hoffmann et al., 2005" "facultative anaerobe" "LPSN" "775946" "515587" "9166586" "4902020" 1.25 "114456008"
|
||||
"B_ENTRBC_LDWG" "Enterobacter ludwigii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "ludwigii" "" "species" "Hoffmann et al., 2005" "aerobe" "LPSN" "775948" "515587" "3221996" "4902020" 1.15 "432763001"
|
||||
"B_ENTRBC_MSSL" "Enterobacter massiliensis" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "massiliensis" "" "species" "Lagier et al., 2014" "likely facultative anaerobe" "LPSN" "791412" "515587" "19002" "8236496" "4902020" 1.5 ""
|
||||
"B_ENTRBC_MORI" "Enterobacter mori" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "mori" "" "species" "Wu et al., 2020" "facultative anaerobe" "LPSN" "789537" "515587" "7970223" "4902020" 1.5 "738504009"
|
||||
"B_ENTRBC_MLLR" "Enterobacter muelleri" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "muelleri" "" "species" "Kampfer et al., 2015" "likely facultative anaerobe" "LPSN" "793469" "515587" "775931" "9138973" "4902020" 1.15 ""
|
||||
"B_ENTRBC_NMTP" "Enterobacter nematophilus" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "nematophilus" "" "species" "Machado et al., 2023" "likely facultative anaerobe" "LPSN" "37107" "515587" "4902020" 1.5 ""
|
||||
"B_ENTRBC_NMPR" "Enterobacter nimipressuralis" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "nimipressuralis" "" "species" "Brenner et al., 1988" "likely facultative anaerobe" "LPSN" "783770" "515587" "791219" "3221985" "4902020" 1.5 ""
|
||||
"B_ENTRBC_OLGTR" "Enterobacter oligotrophica" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "oligotrophica" "" "species" "Akita et al., 2020" "likely facultative anaerobe" "LPSN" "5704" "515587" "5705" "4902020" 1.5 ""
|
||||
"B_ENTRBC_OLGT" "Enterobacter oligotrophicus" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "oligotrophicus" "" "species" "Akita et al., 2020" "likely facultative anaerobe" "LPSN" "5705" "515587" "11205625" "4902020" 1.5 ""
|
||||
"B_ENTRBC_ORYZ" "Enterobacter oryzae" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "oryzae" "" "species" "Peng et al., 2009" "likely facultative anaerobe" "LPSN" "788002" "515587" "791225" "4902020" 1.5 ""
|
||||
"B_ENTRBC_YTCS" "Enterobacter oryzendophyticus" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "oryzendophyticus" "" "species" "Hardoim et al., 2015" "likely facultative anaerobe" "LPSN" "793408" "515587" "794362" "4902020" 1.5 ""
|
||||
"B_ENTRBC_PHLS" "Enterobacter oryziphilus" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "oryziphilus" "" "species" "Hardoim et al., 2015" "likely facultative anaerobe" "LPSN" "793409" "515587" "794361" "4902020" 1.5 ""
|
||||
"B_ENTRBC_PSTR" "Enterobacter pasteurii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "pasteurii" "" "species" "Rahi et al., 2024" "likely facultative anaerobe" "LPSN" "42036" "515587" "4902020" 1.5 ""
|
||||
"B_ENTRBC_PSDR" "Enterobacter pseudoroggenkampii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "pseudoroggenkampii" "" "species" "Wu et al., 2024" "likely facultative anaerobe" "LPSN" "46539" "515587" "4902020" 1.5 ""
|
||||
"B_ENTRBC_PLVR" "Enterobacter pulveris" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "pulveris" "" "species" "Stephan et al., 2008" "likely facultative anaerobe" "LPSN" "786077" "515587" "792221" "4902020" 1.5 ""
|
||||
"B_ENTRBC_PYRN" "Enterobacter pyrinus" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "pyrinus" "" "species" "Chung et al., 1993" "likely facultative anaerobe" "LPSN" "775950" "515587" "791222" "4902020" 1.5 ""
|
||||
"B_ENTRBC_QSHR" "Enterobacter quasihormaechei" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "quasihormaechei" "" "species" "Wang et al., 2020" "likely facultative anaerobe" "LPSN" "5769" "515587" "11173277" "4902020" 1.25 ""
|
||||
"B_ENTRBC_QSMR" "Enterobacter quasimori" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "quasimori" "" "species" "Wu et al., 2021" "likely facultative anaerobe" "LPSN" "18993" "515587" "12089612" "4902020" "7970223" 1.5 ""
|
||||
"B_ENTRBC_QSRG" "Enterobacter quasiroggenkampii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "quasiroggenkampii" "" "species" "Wu et al., 2020" "likely facultative anaerobe" "LPSN" "11939" "515587" "11978083" "4902020" "10853238" 1.5 ""
|
||||
"B_ENTRBC_RDCN" "Enterobacter radicincitans" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "radicincitans" "" "species" "Kampfer et al., 2005" "likely facultative anaerobe" "LPSN" "775951" "515587" "791224" "4902020" 1.5 ""
|
||||
"B_ENTRBC_RGGN" "Enterobacter roggenkampii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "roggenkampii" "" "species" "Sutton et al., 2018" "likely facultative anaerobe" "LPSN" "797972" "515587" "10853238" "4902020" 1.5 ""
|
||||
"B_ENTRBC_SCCH" "Enterobacter sacchari" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "sacchari" "" "species" "Zhu et al., 2013" "likely facultative anaerobe" "LPSN" "790957" "515587" "792047" "4902020" 1.5 ""
|
||||
"B_ENTRBC_SKZK" "Enterobacter sakazakii" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "sakazakii" "" "species" "Farmer et al., 1980" "likely facultative anaerobe" "LPSN" "775952" "515587" "787376" "4902020" 1.15 ""
|
||||
"B_ENTRBC_SMNS" "Enterobacter siamensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "siamensis" "" "species" "Khunthongpan et al., 2014" "likely facultative anaerobe" "LPSN" "792078" "515587" "7513201" "4902020" 1.5 ""
|
||||
"B_ENTRBC_SCHN" "Enterobacter sichuanensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "sichuanensis" "" "species" "Wu et al., 2018" "facultative anaerobe" "LPSN" "798008" "515587" "10677712" "4902020" 1.5 ""
|
||||
"B_ENTRBC_SOLI" "Enterobacter soli" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "soli" "" "species" "Manter et al., 2011" "aerobe" "LPSN" "789236" "515587" "8245025" "4902020" 1.5 ""
|
||||
"B_ENTRBC_TABC" "Enterobacter tabaci" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "tabaci" "" "species" "Duan et al., 2016" "likely facultative anaerobe" "LPSN" "794462" "515587" "789537" "9321910" "4902020" 1.5 ""
|
||||
"B_ENTRBC_TYLR" "Enterobacter taylorae" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "taylorae" "" "species" "Farmer et al., 1985" "likely facultative anaerobe" "LPSN" "783771" "515587" "775932" "3221995" "4902020" "3221977" 1.15 ""
|
||||
"B_ENTRBC_TRCN" "Enterobacter turicensis" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "turicensis" "" "species" "Stephan et al., 2007" "likely facultative anaerobe" "LPSN" "775954" "515587" "792219" "4902020" 1.5 ""
|
||||
"B_ENTRBC_VNHL" "Enterobacter vonholyi" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "vonholyi" "" "species" "Cho et al., 2021" "facultative anaerobe" "LPSN" "20280" "515587" "11854276" "4902020" 1.5 ""
|
||||
"B_ENTRBC_WHNS" "Enterobacter wuhouensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "wuhouensis" "" "species" "Wang et al., 2020" "likely facultative anaerobe" "LPSN" "5770" "515587" "11197778" "4902020" 1.25 ""
|
||||
"B_ENTRBC_XNGF" "Enterobacter xiangfangensis" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "xiangfangensis" "" "species" "Gu et al., 2014" "likely facultative anaerobe" "LPSN" "792056" "515587" "798724" "7777040" "4902020" 1.5 "768157006"
|
||||
"B_ENTRBC" "Enterobacter" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "" "" "genus" "Brady et al., 2013" "facultative anaerobe" "LPSN" "515587" "482" "4902020" "11158430" "3221976" 1 "1093401000112101,58683007"
|
||||
"B_ENTRBC_AERG" "Enterobacter aerogenes" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "aerogenes" "" "species" "Hormaeche et al., 1960" "likely facultative anaerobe" "LPSN" "775928" "515587" "777146" "4902020" 1 ""
|
||||
"B_ENTRBC_AGGL" "Enterobacter agglomerans" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "agglomerans" "" "species" "Beji et al., 1988" "likely facultative anaerobe" "LPSN" "775929" "515587" "779135" "4902020" 1 ""
|
||||
"B_ENTRBC_AMNG" "Enterobacter amnigenus" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "amnigenus" "" "species" "Izard et al., 1981" "likely facultative anaerobe" "LPSN" "775930" "515587" "791220" "4902020" 1 "84221003"
|
||||
"B_ENTRBC_ARCH" "Enterobacter arachidis" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "arachidis" "" "species" "Madhaiyan et al., 2010" "likely facultative anaerobe" "LPSN" "788636" "515587" "791226" "4902020" 1 ""
|
||||
"B_ENTRBC_ASBR" "Enterobacter asburiae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "asburiae" "" "species" "Hoffmann et al., 2005" "facultative anaerobe" "LPSN" "775931" "515587" "3221988" "4902020" 1 "1093601000112103,33115003,714316001"
|
||||
"B_ENTRBC_BGND" "Enterobacter bugandensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "bugandensis" "" "species" "Doijad et al., 2016" "facultative anaerobe" "LPSN" "793840" "515587" "8768455" "4902020" 1 "113611000146106"
|
||||
"B_ENTRBC_CNCRG" "Enterobacter cancerogena" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "cancerogena" "" "species" "Urosevic, 1966" "likely facultative anaerobe" "GBIF" "515587" "3221978" "4902020" "3221977" 1 ""
|
||||
"B_ENTRBC_CNCR" "Enterobacter cancerogenus" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "cancerogenus" "" "species" "Dickey et al., 1988" "facultative anaerobe" "LPSN" "775932" "515587" "3221977" "4902020" 1 "114451003"
|
||||
"B_ENTRBC_CHNG" "Enterobacter chengduensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "chengduensis" "" "species" "Wu et al., 2019" "likely facultative anaerobe" "LPSN" "801301" "515587" "10744670" "4902020" 1 ""
|
||||
"B_ENTRBC_CHND" "Enterobacter chuandaensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "chuandaensis" "" "species" "Wu et al., 2019" "facultative anaerobe" "LPSN" "800158" "515587" "10745032" "4902020" 1 ""
|
||||
"B_ENTRBC_CLOC" "Enterobacter cloacae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "cloacae" "" "species" "Hormaeche et al., 1960" "facultative anaerobe" "LPSN" "775933" "515587" "10926827" "4902020" 1 "714007005,737529000,14385002,721910001,714317005"
|
||||
"B_ENTRBC_CLOC_CLOC" "Enterobacter cloacae cloacae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "cloacae" "cloacae" "subspecies" "Hoffmann et al., 2005" "LPSN" "775934" "775933" "7234533" "10926827" 1 ""
|
||||
"B_ENTRBC_CLOC-C" "Enterobacter cloacae complex" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "cloacae complex" "" "species group" "facultative anaerobe" "manually added" "482" "11158430" 1 ""
|
||||
"B_ENTRBC_CLOC_DSSL" "Enterobacter cloacae dissolvens" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "cloacae" "dissolvens" "subspecies" "Hoffmann et al., 2005" "LPSN" "775935" "775933" "3221982" "10926827" 1 ""
|
||||
"B_ENTRBC_COWN" "Enterobacter cowanii" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "cowanii" "" "species" "Inoue et al., 2001" "likely facultative anaerobe" "LPSN" "775936" "515587" "791223" "4902020" 1 ""
|
||||
"B_ENTRBC_DSSL" "Enterobacter dissolvens" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "dissolvens" "" "species" "Brenner et al., 1988" "likely facultative anaerobe" "LPSN" "775937" "515587" "775935" "4902020" 1 ""
|
||||
"B_ENTRBC_DYKS" "Enterobacter dykesii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "dykesii" "" "species" "Cho et al., 2021" "facultative anaerobe" "LPSN" "20279" "515587" "11517975" "4902020" 1 ""
|
||||
"B_ENTRBC_GRGV" "Enterobacter gergoviae" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "gergoviae" "" "species" "Brenner et al., 1980" "likely facultative anaerobe" "LPSN" "775939" "515587" "791221" "4902020" 1 ""
|
||||
"B_ENTRBC_HLVT" "Enterobacter helveticus" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "helveticus" "" "species" "Stephan et al., 2007" "likely facultative anaerobe" "LPSN" "775940" "515587" "792220" "4902020" 1 ""
|
||||
"B_ENTRBC_HRMC" "Enterobacter hormaechei" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "hormaechei" "" "species" "Hoffmann et al., 2005" "facultative anaerobe" "LPSN" "783768" "515587" "3221997" "4902020" 1 "1094301000112105,114454006"
|
||||
"B_ENTRBC_HRMC_HFFM" "Enterobacter hormaechei hoffmannii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "hormaechei" "hoffmannii" "subspecies" "Sutton et al., 2018" "LPSN" "797971" "783768" "3221997" 1 ""
|
||||
"B_ENTRBC_HRMC_HRMC" "Enterobacter hormaechei hormaechei" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "hormaechei" "hormaechei" "subspecies" "Hoffmann et al., 2016" "LPSN" "775942" "783768" "9566170" "3221997" 1 ""
|
||||
"B_ENTRBC_HRMC_OHAR" "Enterobacter hormaechei oharae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "hormaechei" "oharae" "subspecies" "Hoffmann et al., 2016" "LPSN" "775943" "783768" "9393949" "3221997" 1 ""
|
||||
"B_ENTRBC_HRMC_STGR" "Enterobacter hormaechei steigerwaltii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "hormaechei" "steigerwaltii" "subspecies" "Hoffmann et al., 2016" "LPSN" "775944" "783768" "9373068" "3221997" 1 ""
|
||||
"B_ENTRBC_HRMC_XNGF" "Enterobacter hormaechei xiangfangensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "hormaechei" "xiangfangensis" "subspecies" "Sutton et al., 2018" "LPSN" "798724" "783768" "3221997" 1 ""
|
||||
"B_ENTRBC_HXNS" "Enterobacter huaxiensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "huaxiensis" "" "species" "Wu et al., 2019" "facultative anaerobe" "LPSN" "800159" "515587" "10827626" "4902020" 1 ""
|
||||
"B_ENTRBC_INTR" "Enterobacter intermedium" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "intermedium" "" "species" "Izard et al., 1980" "likely facultative anaerobe" "LPSN" "783769" "515587" "775945" "4902020" 1 ""
|
||||
"B_ENTRBC_RMDS" "Enterobacter intermedius" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "intermedius" "" "species" "Izard et al., 1980" "likely facultative anaerobe" "LPSN" "775945" "515587" "777172" "4902020" 1 ""
|
||||
"B_ENTRBC_KOBE" "Enterobacter kobei" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "kobei" "" "species" "Hoffmann et al., 2005" "facultative anaerobe" "LPSN" "775946" "515587" "9166586" "4902020" 1 "114456008"
|
||||
"B_ENTRBC_LDWG" "Enterobacter ludwigii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "ludwigii" "" "species" "Hoffmann et al., 2005" "aerobe" "LPSN" "775948" "515587" "3221996" "4902020" 1 "432763001"
|
||||
"B_ENTRBC_MSSL" "Enterobacter massiliensis" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "massiliensis" "" "species" "Lagier et al., 2014" "likely facultative anaerobe" "LPSN" "791412" "515587" "19002" "8236496" "4902020" 1 ""
|
||||
"B_ENTRBC_MORI" "Enterobacter mori" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "mori" "" "species" "Wu et al., 2020" "facultative anaerobe" "LPSN" "789537" "515587" "7970223" "4902020" 1 "738504009"
|
||||
"B_ENTRBC_MLLR" "Enterobacter muelleri" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "muelleri" "" "species" "Kampfer et al., 2015" "likely facultative anaerobe" "LPSN" "793469" "515587" "775931" "9138973" "4902020" 1 ""
|
||||
"B_ENTRBC_NMTP" "Enterobacter nematophilus" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "nematophilus" "" "species" "Machado et al., 2023" "likely facultative anaerobe" "LPSN" "37107" "515587" "4902020" 1 ""
|
||||
"B_ENTRBC_NMPR" "Enterobacter nimipressuralis" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "nimipressuralis" "" "species" "Brenner et al., 1988" "likely facultative anaerobe" "LPSN" "783770" "515587" "791219" "3221985" "4902020" 1 ""
|
||||
"B_ENTRBC_OLGTR" "Enterobacter oligotrophica" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "oligotrophica" "" "species" "Akita et al., 2020" "likely facultative anaerobe" "LPSN" "5704" "515587" "5705" "4902020" 1 ""
|
||||
"B_ENTRBC_OLGT" "Enterobacter oligotrophicus" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "oligotrophicus" "" "species" "Akita et al., 2020" "likely facultative anaerobe" "LPSN" "5705" "515587" "11205625" "4902020" 1 ""
|
||||
"B_ENTRBC_ORYZ" "Enterobacter oryzae" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "oryzae" "" "species" "Peng et al., 2009" "likely facultative anaerobe" "LPSN" "788002" "515587" "791225" "4902020" 1 ""
|
||||
"B_ENTRBC_YTCS" "Enterobacter oryzendophyticus" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "oryzendophyticus" "" "species" "Hardoim et al., 2015" "likely facultative anaerobe" "LPSN" "793408" "515587" "794362" "4902020" 1 ""
|
||||
"B_ENTRBC_PHLS" "Enterobacter oryziphilus" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "oryziphilus" "" "species" "Hardoim et al., 2015" "likely facultative anaerobe" "LPSN" "793409" "515587" "794361" "4902020" 1 ""
|
||||
"B_ENTRBC_PSTR" "Enterobacter pasteurii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "pasteurii" "" "species" "Rahi et al., 2024" "likely facultative anaerobe" "LPSN" "42036" "515587" "4902020" 1 ""
|
||||
"B_ENTRBC_PSDR" "Enterobacter pseudoroggenkampii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "pseudoroggenkampii" "" "species" "Wu et al., 2024" "likely facultative anaerobe" "LPSN" "46539" "515587" "4902020" 1 ""
|
||||
"B_ENTRBC_PLVR" "Enterobacter pulveris" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "pulveris" "" "species" "Stephan et al., 2008" "likely facultative anaerobe" "LPSN" "786077" "515587" "792221" "4902020" 1 ""
|
||||
"B_ENTRBC_PYRN" "Enterobacter pyrinus" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "pyrinus" "" "species" "Chung et al., 1993" "likely facultative anaerobe" "LPSN" "775950" "515587" "791222" "4902020" 1 ""
|
||||
"B_ENTRBC_QSHR" "Enterobacter quasihormaechei" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "quasihormaechei" "" "species" "Wang et al., 2020" "likely facultative anaerobe" "LPSN" "5769" "515587" "11173277" "4902020" 1 ""
|
||||
"B_ENTRBC_QSMR" "Enterobacter quasimori" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "quasimori" "" "species" "Wu et al., 2021" "likely facultative anaerobe" "LPSN" "18993" "515587" "12089612" "4902020" "7970223" 1 ""
|
||||
"B_ENTRBC_QSRG" "Enterobacter quasiroggenkampii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "quasiroggenkampii" "" "species" "Wu et al., 2020" "likely facultative anaerobe" "LPSN" "11939" "515587" "11978083" "4902020" "10853238" 1 ""
|
||||
"B_ENTRBC_RDCN" "Enterobacter radicincitans" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "radicincitans" "" "species" "Kampfer et al., 2005" "likely facultative anaerobe" "LPSN" "775951" "515587" "791224" "4902020" 1 ""
|
||||
"B_ENTRBC_RGGN" "Enterobacter roggenkampii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "roggenkampii" "" "species" "Sutton et al., 2018" "likely facultative anaerobe" "LPSN" "797972" "515587" "10853238" "4902020" 1 ""
|
||||
"B_ENTRBC_SCCH" "Enterobacter sacchari" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "sacchari" "" "species" "Zhu et al., 2013" "likely facultative anaerobe" "LPSN" "790957" "515587" "792047" "4902020" 1 ""
|
||||
"B_ENTRBC_SKZK" "Enterobacter sakazakii" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "sakazakii" "" "species" "Farmer et al., 1980" "likely facultative anaerobe" "LPSN" "775952" "515587" "787376" "4902020" 1 ""
|
||||
"B_ENTRBC_SMNS" "Enterobacter siamensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "siamensis" "" "species" "Khunthongpan et al., 2014" "likely facultative anaerobe" "LPSN" "792078" "515587" "7513201" "4902020" 1 ""
|
||||
"B_ENTRBC_SCHN" "Enterobacter sichuanensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "sichuanensis" "" "species" "Wu et al., 2018" "facultative anaerobe" "LPSN" "798008" "515587" "10677712" "4902020" 1 ""
|
||||
"B_ENTRBC_SOLI" "Enterobacter soli" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "soli" "" "species" "Manter et al., 2011" "aerobe" "LPSN" "789236" "515587" "8245025" "4902020" 1 ""
|
||||
"B_ENTRBC_TABC" "Enterobacter tabaci" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "tabaci" "" "species" "Duan et al., 2016" "likely facultative anaerobe" "LPSN" "794462" "515587" "789537" "9321910" "4902020" 1 ""
|
||||
"B_ENTRBC_TYLR" "Enterobacter taylorae" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "taylorae" "" "species" "Farmer et al., 1985" "likely facultative anaerobe" "LPSN" "783771" "515587" "775932" "3221995" "4902020" "3221977" 1 ""
|
||||
"B_ENTRBC_TRCN" "Enterobacter turicensis" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "turicensis" "" "species" "Stephan et al., 2007" "likely facultative anaerobe" "LPSN" "775954" "515587" "792219" "4902020" 1 ""
|
||||
"B_ENTRBC_VNHL" "Enterobacter vonholyi" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "vonholyi" "" "species" "Cho et al., 2021" "facultative anaerobe" "LPSN" "20280" "515587" "11854276" "4902020" 1 ""
|
||||
"B_ENTRBC_WHNS" "Enterobacter wuhouensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "wuhouensis" "" "species" "Wang et al., 2020" "likely facultative anaerobe" "LPSN" "5770" "515587" "11197778" "4902020" 1 ""
|
||||
"B_ENTRBC_XNGF" "Enterobacter xiangfangensis" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Enterobacter" "xiangfangensis" "" "species" "Gu et al., 2014" "likely facultative anaerobe" "LPSN" "792056" "515587" "798724" "7777040" "4902020" 1 "768157006"
|
||||
"B_[ORD]_ENTRBCTR" "Enterobacterales" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "" "" "" "" "order" "Adeolu et al., 2016" "LPSN" "5188" "40" "10801383" "362" 2 "417937002"
|
||||
"B_[FAM]_ENTRBCTR" "Enterobacteriaceae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "" "" "" "family" "Rahn, 1937" "LPSN" "482" "5188" "11158430" "10801383" 2 "734351004,106544002,243311003"
|
||||
"AN_ENTRB" "Enterobius" "accepted" "Animalia" "Nematoda" "Chromadorea" "Rhabditida" "Oxyuridae" "Enterobius" "" "" "genus" "Leach, 1853" "GBIF" "2284339" "6488" 1.25 ""
|
||||
@@ -41267,20 +41267,20 @@
|
||||
"F_[FAM]_MORCHLLC" "Morchellaceae" "accepted" "Fungi" "Ascomycota" "Pezizomycetes" "Pezizales" "Morchellaceae" "" "" "" "family" "Reichenbach, 1834" "MycoBank" "81027" "90494" "8398" "1057" 2 "427498004"
|
||||
"F_MORFE" "Morfea" "accepted" "Fungi" "Ascomycota" "Dothideomycetes" "Capnodiales" "Capnodiaceae" "Morfea" "" "" "genus" "GBIF" "82008" "8325519" 2 ""
|
||||
"F_MORFE_PTGN" "Morfea patagonica" "unknown" "Fungi" "Ascomycota" "Dothideomycetes" "Capnodiales" "Capnodiaceae" "Morfea" "patagonica" "" "species" "manually added" "8325519" 2 ""
|
||||
"B_MRGNL" "Morganella" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Morganella" "" "" "genus" "Fulton, 1943" "facultative anaerobe" "LPSN" "516125" "2058" "10010535" 1.15 "50713005,114460006"
|
||||
"B_MRGNL_AFRA" "Morganella afra" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Morganella" "afra" "" "species" "Kreisel et al." "likely facultative anaerobe" "GBIF" "516125" "5242940" 1.5 ""
|
||||
"B_MRGNL_ASTR" "Morganella austromontana" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Morganella" "austromontana" "" "species" "Alves et al." "likely facultative anaerobe" "GBIF" "516125" "9712637" 1.5 ""
|
||||
"B_MRGNL_BNJM" "Morganella benjamin" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Morganella" "benjamin" "" "species" "Rick" "likely facultative anaerobe" "GBIF" "516125" "5453744" "5454119" 1.5 ""
|
||||
"B_MRGNL_JMNI" "Morganella benjaminii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Morganella" "benjaminii" "" "species" "Cortez et al." "likely facultative anaerobe" "GBIF" "516125" "5454119" 1.5 ""
|
||||
"B_MRGNL_MXCN" "Morganella mexicana" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Morganella" "mexicana" "" "species" "Zeller" "likely facultative anaerobe" "GBIF" "516125" "5242938" 1.5 ""
|
||||
"B_MRGNL_MRGN" "Morganella morganii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Morganella" "morganii" "" "species" "Fulton, 1943" "facultative anaerobe" "LPSN" "778330" "516125" "10918040" 1.15 "243301005,707293009"
|
||||
"B_MRGNL_MRGN_MRGN" "Morganella morganii morganii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Morganella" "morganii" "morganii" "subspecies" "Jensen et al., 1992" "LPSN" "778331" "778330" "10918040" 1.15 ""
|
||||
"B_MRGNL_MRGN_SIBN" "Morganella morganii sibonii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Morganella" "morganii" "sibonii" "subspecies" "Jensen et al., 1992" "LPSN" "778332" "778330" "10918040" 1.15 ""
|
||||
"B_MRGNL_PSYC" "Morganella psychrotolerans" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Morganella" "psychrotolerans" "" "species" "Emborg et al., 2006" "aerobe" "LPSN" "778333" "516125" "10867987" 1.5 ""
|
||||
"B_MRGNL_PGGR" "Morganella puiggarii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Morganella" "puiggarii" "" "species" "Kreisel et al." "likely facultative anaerobe" "GBIF" "516125" "5242934" 1.5 ""
|
||||
"B_MRGNL_RIMS" "Morganella rimosa" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Morganella" "rimosa" "" "species" "Baseia et al." "likely facultative anaerobe" "GBIF" "516125" "7688529" 1.5 ""
|
||||
"B_MRGNL_SMNS" "Morganella samoensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Morganella" "samoensis" "" "species" "Ponce de Leon" "likely facultative anaerobe" "GBIF" "516125" "5242935" 1.5 ""
|
||||
"B_MRGNL_STRC" "Morganella stercoraria" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Morganella" "stercoraria" "" "species" "Ponce de Leon" "likely facultative anaerobe" "GBIF" "516125" "5242939" 1.5 ""
|
||||
"B_MRGNL" "Morganella" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Morganella" "" "" "genus" "Fulton, 1943" "facultative anaerobe" "LPSN" "516125" "2058" "10010535" 1 "50713005,114460006"
|
||||
"B_MRGNL_AFRA" "Morganella afra" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Morganella" "afra" "" "species" "Kreisel et al." "likely facultative anaerobe" "GBIF" "516125" "5242940" 1 ""
|
||||
"B_MRGNL_ASTR" "Morganella austromontana" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Morganella" "austromontana" "" "species" "Alves et al." "likely facultative anaerobe" "GBIF" "516125" "9712637" 1 ""
|
||||
"B_MRGNL_BNJM" "Morganella benjamin" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Morganella" "benjamin" "" "species" "Rick" "likely facultative anaerobe" "GBIF" "516125" "5453744" "5454119" 1 ""
|
||||
"B_MRGNL_JMNI" "Morganella benjaminii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Morganella" "benjaminii" "" "species" "Cortez et al." "likely facultative anaerobe" "GBIF" "516125" "5454119" 1 ""
|
||||
"B_MRGNL_MXCN" "Morganella mexicana" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Morganella" "mexicana" "" "species" "Zeller" "likely facultative anaerobe" "GBIF" "516125" "5242938" 1 ""
|
||||
"B_MRGNL_MRGN" "Morganella morganii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Morganella" "morganii" "" "species" "Fulton, 1943" "facultative anaerobe" "LPSN" "778330" "516125" "10918040" 1 "243301005,707293009"
|
||||
"B_MRGNL_MRGN_MRGN" "Morganella morganii morganii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Morganella" "morganii" "morganii" "subspecies" "Jensen et al., 1992" "LPSN" "778331" "778330" "10918040" 1 ""
|
||||
"B_MRGNL_MRGN_SIBN" "Morganella morganii sibonii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Morganella" "morganii" "sibonii" "subspecies" "Jensen et al., 1992" "LPSN" "778332" "778330" "10918040" 1 ""
|
||||
"B_MRGNL_PSYC" "Morganella psychrotolerans" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Morganella" "psychrotolerans" "" "species" "Emborg et al., 2006" "aerobe" "LPSN" "778333" "516125" "10867987" 1 ""
|
||||
"B_MRGNL_PGGR" "Morganella puiggarii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Morganella" "puiggarii" "" "species" "Kreisel et al." "likely facultative anaerobe" "GBIF" "516125" "5242934" 1 ""
|
||||
"B_MRGNL_RIMS" "Morganella rimosa" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Morganella" "rimosa" "" "species" "Baseia et al." "likely facultative anaerobe" "GBIF" "516125" "7688529" 1 ""
|
||||
"B_MRGNL_SMNS" "Morganella samoensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Morganella" "samoensis" "" "species" "Ponce de Leon" "likely facultative anaerobe" "GBIF" "516125" "5242935" 1 ""
|
||||
"B_MRGNL_STRC" "Morganella stercoraria" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Morganella" "stercoraria" "" "species" "Ponce de Leon" "likely facultative anaerobe" "GBIF" "516125" "5242939" 1 ""
|
||||
"B_[FAM]_MORGNLLC" "Morganellaceae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "" "" "" "family" "Adeolu et al., 2016" "LPSN" "2058" "5188" "10010535" "10801383" 2 "860983002"
|
||||
"B_MRTLL" "Moritella" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Alteromonadales" "Moritellaceae" "Moritella" "" "" "genus" "Urakawa et al., 1999" "aerobe" "LPSN" "516126" "905" "8955" 2 "426527007"
|
||||
"B_MRTLL_ABYS" "Moritella abyssi" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Alteromonadales" "Moritellaceae" "Moritella" "abyssi" "" "species" "Xu et al., 2003" "aerobe" "LPSN" "784292" "516126" "3222663" 2 "430593002"
|
||||
@@ -57600,23 +57600,23 @@
|
||||
"B_PRTCT_SPHN" "Proteocatella sphenisci" "accepted" "Bacteria" "Bacillota" "Clostridia" "Eubacteriales" "Peptostreptococcaceae" "Proteocatella" "sphenisci" "" "species" "Pikuta et al., 2009" "anaerobe" "LPSN" "788083" "517896" "8184974" "7366430" 2 ""
|
||||
"P_PRTRS" "Proterospongia" "unknown" "Protozoa" "Choanozoa" "Choanoflagellatea" "Choanoflagellida" "Codosigidae" "Proterospongia" "" "" "genus" "manually added" 2 ""
|
||||
"P_PRTRS_NANA" "Proterospongia nana" "synonym" "Protozoa" "Choanozoa" "Choanoflagellatea" "Choanoflagellida" "Codosigidae" "Proterospongia" "nana" "" "species" "Braarud, 1935" "GBIF" "7943841" "8065912" 2 ""
|
||||
"B_PROTS" "Proteus" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "" "" "genus" "Hyun et al., 2016" "facultative anaerobe" "LPSN" "516404" "2058" "10010535" 1.15 "50517009"
|
||||
"B_PROTS_ALMN" "Proteus alimentorum" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "alimentorum" "" "species" "Dai et al., 2018" "facultative anaerobe" "LPSN" "797660" "516404" "10736368" 1.5 ""
|
||||
"B_PROTS_CBRS" "Proteus cibarius" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "cibarius" "" "species" "Hyun et al., 2016" "likely facultative anaerobe" "LPSN" "794180" "516404" "17798" "9033867" 1.5 ""
|
||||
"B_PROTS_CIBI" "Proteus cibi" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "cibi" "" "species" "Dai et al., 2019" "facultative anaerobe" "LPSN" "800142" "516404" "11696556" 1.5 ""
|
||||
"B_PROTS_CLMB" "Proteus columbae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "columbae" "" "species" "Dai et al., 2018" "anaerobe" "LPSN" "797522" "516404" "10711942" 1.5 ""
|
||||
"B_PROTS_FACS" "Proteus faecis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "faecis" "" "species" "Dai et al., 2019" "facultative anaerobe" "LPSN" "800143" "516404" "11770492" 1.25 ""
|
||||
"B_PROTS_HASR" "Proteus hauseri" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "hauseri" "" "species" "OHara et al., 2000" "facultative anaerobe" "LPSN" "779871" "516404" "5427603" 1.5 "417592004"
|
||||
"B_PROTS_INCN" "Proteus inconstans" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "inconstans" "" "species" "Shaw et al., 1955" "likely facultative anaerobe" "LPSN" "779873" "516404" "779886" 1.15 "114461005"
|
||||
"B_PROTS_MRBL" "Proteus mirabilis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "mirabilis" "" "species" "Hauser, 1885" "facultative anaerobe" "LPSN" "779875" "516404" "10887515" 1.15 "719793006,713929002,714314003,73457008"
|
||||
"B_PROTS_MRGN" "Proteus morganii" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "morganii" "" "species" "Yale, 1939" "likely facultative anaerobe" "LPSN" "779876" "516404" "778330" 1.15 ""
|
||||
"B_PROTS_MYXF" "Proteus myxofaciens" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "myxofaciens" "" "species" "Cosenza et al., 1966" "aerobe" "LPSN" "779877" "516404" "5427604" 1.5 ""
|
||||
"B_PROTS_PNNR" "Proteus penneri" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "penneri" "" "species" "Hickman et al., 1983" "facultative anaerobe" "LPSN" "779878" "516404" "5427605" 1.15 "45298005"
|
||||
"B_PROTS_RTTG" "Proteus rettgeri" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "rettgeri" "" "species" "Rustigian et al., 1943" "likely facultative anaerobe" "LPSN" "779879" "516404" "779889" 1.15 ""
|
||||
"B_PROTS_TERR" "Proteus terrae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "terrae" "" "species" "Behrendt et al., 2016" "likely facultative anaerobe" "LPSN" "793907" "516404" "8776868" 1.5 ""
|
||||
"B_PROTS_TERR_CBRS" "Proteus terrae cibarius" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "terrae" "cibarius" "subspecies" "Behrendt et al., 2021" "LPSN" "17798" "793907" "8776868" 1.5 ""
|
||||
"B_PROTS_TERR_TERR" "Proteus terrae terrae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "terrae" "terrae" "subspecies" "Behrendt et al., 2021" "LPSN" "17799" "793907" "8776868" 1.5 ""
|
||||
"B_PROTS_VLGR" "Proteus vulgaris" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "vulgaris" "" "species" "Judicial Commission, 1999" "facultative anaerobe" "LPSN" "779882" "516404" "10779047" 1.15 "45834001"
|
||||
"B_PROTS" "Proteus" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "" "" "genus" "Hyun et al., 2016" "facultative anaerobe" "LPSN" "516404" "2058" "10010535" 1 "50517009"
|
||||
"B_PROTS_ALMN" "Proteus alimentorum" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "alimentorum" "" "species" "Dai et al., 2018" "facultative anaerobe" "LPSN" "797660" "516404" "10736368" 1 ""
|
||||
"B_PROTS_CBRS" "Proteus cibarius" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "cibarius" "" "species" "Hyun et al., 2016" "likely facultative anaerobe" "LPSN" "794180" "516404" "17798" "9033867" 1 ""
|
||||
"B_PROTS_CIBI" "Proteus cibi" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "cibi" "" "species" "Dai et al., 2019" "facultative anaerobe" "LPSN" "800142" "516404" "11696556" 1 ""
|
||||
"B_PROTS_CLMB" "Proteus columbae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "columbae" "" "species" "Dai et al., 2018" "anaerobe" "LPSN" "797522" "516404" "10711942" 1 ""
|
||||
"B_PROTS_FACS" "Proteus faecis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "faecis" "" "species" "Dai et al., 2019" "facultative anaerobe" "LPSN" "800143" "516404" "11770492" 1 ""
|
||||
"B_PROTS_HASR" "Proteus hauseri" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "hauseri" "" "species" "OHara et al., 2000" "facultative anaerobe" "LPSN" "779871" "516404" "5427603" 1 "417592004"
|
||||
"B_PROTS_INCN" "Proteus inconstans" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "inconstans" "" "species" "Shaw et al., 1955" "likely facultative anaerobe" "LPSN" "779873" "516404" "779886" 1 "114461005"
|
||||
"B_PROTS_MRBL" "Proteus mirabilis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "mirabilis" "" "species" "Hauser, 1885" "facultative anaerobe" "LPSN" "779875" "516404" "10887515" 1 "719793006,713929002,714314003,73457008"
|
||||
"B_PROTS_MRGN" "Proteus morganii" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "morganii" "" "species" "Yale, 1939" "likely facultative anaerobe" "LPSN" "779876" "516404" "778330" 1 ""
|
||||
"B_PROTS_MYXF" "Proteus myxofaciens" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "myxofaciens" "" "species" "Cosenza et al., 1966" "aerobe" "LPSN" "779877" "516404" "5427604" 1 ""
|
||||
"B_PROTS_PNNR" "Proteus penneri" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "penneri" "" "species" "Hickman et al., 1983" "facultative anaerobe" "LPSN" "779878" "516404" "5427605" 1 "45298005"
|
||||
"B_PROTS_RTTG" "Proteus rettgeri" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "rettgeri" "" "species" "Rustigian et al., 1943" "likely facultative anaerobe" "LPSN" "779879" "516404" "779889" 1 ""
|
||||
"B_PROTS_TERR" "Proteus terrae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "terrae" "" "species" "Behrendt et al., 2016" "likely facultative anaerobe" "LPSN" "793907" "516404" "8776868" 1 ""
|
||||
"B_PROTS_TERR_CBRS" "Proteus terrae cibarius" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "terrae" "cibarius" "subspecies" "Behrendt et al., 2021" "LPSN" "17798" "793907" "8776868" 1 ""
|
||||
"B_PROTS_TERR_TERR" "Proteus terrae terrae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "terrae" "terrae" "subspecies" "Behrendt et al., 2021" "LPSN" "17799" "793907" "8776868" 1 ""
|
||||
"B_PROTS_VLGR" "Proteus vulgaris" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "vulgaris" "" "species" "Judicial Commission, 1999" "facultative anaerobe" "LPSN" "779882" "516404" "10779047" 1 "45834001"
|
||||
"F_PRTBL" "Protoblastenia" "accepted" "Fungi" "Ascomycota" "Lecanoromycetes" "Lecanorales" "Psoraceae" "Protoblastenia" "" "" "genus" "Steiner" "GBIF" "81306" "2603234" "3286932" 2 ""
|
||||
"F_PRTBL_ARNT" "Protoblastenia aurantiaca" "unknown" "Fungi" "Ascomycota" "Lecanoromycetes" "Lecanorales" "Psoraceae" "Protoblastenia" "aurantiaca" "" "species" "manually added" "2603234" 2 ""
|
||||
"F_PRTBL_CERN" "Protoblastenia cerina" "unknown" "Fungi" "Ascomycota" "Lecanoromycetes" "Lecanorales" "Psoraceae" "Protoblastenia" "cerina" "" "species" "manually added" "2603234" 2 ""
|
||||
@@ -57705,20 +57705,20 @@
|
||||
"F_PRTNG" "Protounguicularia" "accepted" "Fungi" "Ascomycota" "Leotiomycetes" "Helotiales" "Hyaloscyphaceae" "Protounguicularia" "" "" "genus" "Raitv et al." "GBIF" "80871" "2586388" "8382" 2 ""
|
||||
"F_PRTNG_QRCN" "Protounguicularia quercina" "unknown" "Fungi" "Ascomycota" "Leotiomycetes" "Helotiales" "Hyaloscyphaceae" "Protounguicularia" "quercina" "" "species" "manually added" "2586388" 2 ""
|
||||
"P_[KNG]_PROTOZOA" "Protozoa" "accepted" "Protozoa" "" "" "" "" "" "" "" "kingdom" "GBIF" "7" 2 "417396000,416403006"
|
||||
"B_PRVDN" "Providencia" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Providencia" "" "" "genus" "Ewing, 1962" "facultative anaerobe" "LPSN" "516408" "2058" "10010535" 1.15 "112284001"
|
||||
"B_PRVDN_ALCL" "Providencia alcalifaciens" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Providencia" "alcalifaciens" "" "species" "Ewing, 1962" "facultative anaerobe" "LPSN" "779886" "516408" "10684677" 1.15 "46349009"
|
||||
"B_PRVDN_BRHD" "Providencia burhodogranariea" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Providencia" "burhodogranariea" "" "species" "Juneja et al., 2009" "aerobe" "LPSN" "787874" "516408" "7785725" 1.5 ""
|
||||
"B_PRVDN_FRDR" "Providencia friedericiana" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Providencia" "friedericiana" "" "species" "Muller, 1983" "likely facultative anaerobe" "LPSN" "779887" "516408" "779890" 1.5 ""
|
||||
"B_PRVDN_HMBC" "Providencia heimbachae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Providencia" "heimbachae" "" "species" "Muller et al., 1986" "aerobe" "LPSN" "779888" "516408" "3221723" 1.25 "47300009"
|
||||
"B_PRVDN_HXNS" "Providencia huaxiensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Providencia" "huaxiensis" "" "species" "Hu et al., 2019" "facultative anaerobe" "LPSN" "5314" "516408" "11892170" 1.5 ""
|
||||
"B_PRVDN_INCN" "Providencia inconstans" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Providencia" "inconstans" "" "species" "Ornstein, 1920" "likely facultative anaerobe" "GBIF" "516408" "5427600" "3221717" 1.5 ""
|
||||
"B_PRVDN_MNGN" "Providencia manganoxydans" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Providencia" "manganoxydans" "" "species" "Li et al., 2022" "likely facultative anaerobe" "LPSN" "29656" "516408" 1.5 ""
|
||||
"B_PRVDN_RTTG" "Providencia rettgeri" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Providencia" "rettgeri" "" "species" "Brenner et al., 1978" "facultative anaerobe" "LPSN" "779889" "516408" "11005028" 1.15 "14196002"
|
||||
"B_PRVDN_RSTG" "Providencia rustigianii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Providencia" "rustigianii" "" "species" "Hickman-Brenner et al., 1983" "facultative anaerobe" "LPSN" "779890" "516408" "3221721" 1.5 "19196004"
|
||||
"B_PRVDN_SNEB" "Providencia sneebia" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Providencia" "sneebia" "" "species" "Juneja et al., 2009" "aerobe" "LPSN" "787875" "516408" "8028035" 1.5 ""
|
||||
"B_PRVDN_STRT" "Providencia stuartii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Providencia" "stuartii" "" "species" "Ewing, 1962" "facultative anaerobe" "LPSN" "779892" "516408" "12123745" 1.15 "1445008"
|
||||
"B_PRVDN_THLN" "Providencia thailandensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Providencia" "thailandensis" "" "species" "Khunthongpan et al., 2014" "likely facultative anaerobe" "LPSN" "792089" "516408" 1.5 ""
|
||||
"B_PRVDN_VRMC" "Providencia vermicola" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Providencia" "vermicola" "" "species" "Somvanshi et al., 2006" "aerobe" "LPSN" "779893" "516408" "3221718" 1.5 "6031000146109"
|
||||
"B_PRVDN" "Providencia" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Providencia" "" "" "genus" "Ewing, 1962" "facultative anaerobe" "LPSN" "516408" "2058" "10010535" 1 "112284001"
|
||||
"B_PRVDN_ALCL" "Providencia alcalifaciens" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Providencia" "alcalifaciens" "" "species" "Ewing, 1962" "facultative anaerobe" "LPSN" "779886" "516408" "10684677" 1 "46349009"
|
||||
"B_PRVDN_BRHD" "Providencia burhodogranariea" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Providencia" "burhodogranariea" "" "species" "Juneja et al., 2009" "aerobe" "LPSN" "787874" "516408" "7785725" 1 ""
|
||||
"B_PRVDN_FRDR" "Providencia friedericiana" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Providencia" "friedericiana" "" "species" "Muller, 1983" "likely facultative anaerobe" "LPSN" "779887" "516408" "779890" 1 ""
|
||||
"B_PRVDN_HMBC" "Providencia heimbachae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Providencia" "heimbachae" "" "species" "Muller et al., 1986" "aerobe" "LPSN" "779888" "516408" "3221723" 1 "47300009"
|
||||
"B_PRVDN_HXNS" "Providencia huaxiensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Providencia" "huaxiensis" "" "species" "Hu et al., 2019" "facultative anaerobe" "LPSN" "5314" "516408" "11892170" 1 ""
|
||||
"B_PRVDN_INCN" "Providencia inconstans" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Providencia" "inconstans" "" "species" "Ornstein, 1920" "likely facultative anaerobe" "GBIF" "516408" "5427600" "3221717" 1 ""
|
||||
"B_PRVDN_MNGN" "Providencia manganoxydans" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Providencia" "manganoxydans" "" "species" "Li et al., 2022" "likely facultative anaerobe" "LPSN" "29656" "516408" 1 ""
|
||||
"B_PRVDN_RTTG" "Providencia rettgeri" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Providencia" "rettgeri" "" "species" "Brenner et al., 1978" "facultative anaerobe" "LPSN" "779889" "516408" "11005028" 1 "14196002"
|
||||
"B_PRVDN_RSTG" "Providencia rustigianii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Providencia" "rustigianii" "" "species" "Hickman-Brenner et al., 1983" "facultative anaerobe" "LPSN" "779890" "516408" "3221721" 1 "19196004"
|
||||
"B_PRVDN_SNEB" "Providencia sneebia" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Providencia" "sneebia" "" "species" "Juneja et al., 2009" "aerobe" "LPSN" "787875" "516408" "8028035" 1 ""
|
||||
"B_PRVDN_STRT" "Providencia stuartii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Providencia" "stuartii" "" "species" "Ewing, 1962" "facultative anaerobe" "LPSN" "779892" "516408" "12123745" 1 "1445008"
|
||||
"B_PRVDN_THLN" "Providencia thailandensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Providencia" "thailandensis" "" "species" "Khunthongpan et al., 2014" "likely facultative anaerobe" "LPSN" "792089" "516408" 1 ""
|
||||
"B_PRVDN_VRMC" "Providencia vermicola" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Providencia" "vermicola" "" "species" "Somvanshi et al., 2006" "aerobe" "LPSN" "779893" "516408" "3221718" 1 "6031000146109"
|
||||
"B_PRUG" "Prug" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Prug" "" "" "genus" "GBIF" "482" "11062048" "11158430" 2 ""
|
||||
"P_[FAM]_PSLTRMND" "Psalteriomonadidae" "accepted" "Protozoa" "" "" "" "Psalteriomonadidae" "" "" "" "family" "GBIF" "9445654" "7" 2 ""
|
||||
"P_PSLTR" "Psalteriomonas" "accepted" "Protozoa" "" "" "" "Psalteriomonadidae" "Psalteriomonas" "" "" "genus" "Broers et al., 1990" "GBIF" "4892809" "9445654" 2 ""
|
||||
@@ -65415,38 +65415,38 @@
|
||||
"B_SRPLN_INTR" "Serpulina intermedia" "synonym" "Bacteria" "Spirochaetota" "Spirochaetia" "Brachyspirales" "Brachyspiraceae" "Serpulina" "intermedia" "" "species" "Stanton et al., 1997" "LPSN" "784881" "516589" "783550" 1.5 ""
|
||||
"B_SRPLN_MRDC" "Serpulina murdochii" "synonym" "Bacteria" "Spirochaetota" "Spirochaetia" "Brachyspirales" "Brachyspiraceae" "Serpulina" "murdochii" "" "species" "Stanton et al., 1997" "LPSN" "780870" "516589" "774158" 1.5 ""
|
||||
"B_SRPLN_PLSC" "Serpulina pilosicoli" "synonym" "Bacteria" "Spirochaetota" "Spirochaetia" "Brachyspirales" "Brachyspiraceae" "Serpulina" "pilosicoli" "" "species" "Trott et al., 1996" "LPSN" "784882" "516589" "783551" 1.15 ""
|
||||
"B_SERRT" "Serratia" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "" "" "genus" "Bizio, 1823" "facultative anaerobe" "LPSN" "516590" "2057" "10277639" "10405611" "3221744" 1.15 "42025004"
|
||||
"B_SERRT_AQTL" "Serratia aquatilis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "aquatilis" "" "species" "Kampfer et al., 2016" "facultative anaerobe" "LPSN" "793778" "516590" "9100314" "10277639" 1.5 ""
|
||||
"B_SERRT_BCKL" "Serratia bockelmannii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "bockelmannii" "" "species" "Cho et al., 2020" "facultative anaerobe" "LPSN" "3576" "516590" "11609327" "10277639" 1.5 ""
|
||||
"B_SERRT_ENTM" "Serratia entomophila" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "entomophila" "" "species" "Grimont et al., 1988" "aerobe" "LPSN" "780871" "516590" "3221761" "10277639" 1.5 "76656001"
|
||||
"B_SERRT_FICR" "Serratia ficaria" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "ficaria" "" "species" "Garcia-Fraile et al., 2020" "facultative anaerobe" "LPSN" "780872" "516590" "3221758" "10277639" 1.15 "802004"
|
||||
"B_SERRT_FNTC" "Serratia fonticola" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "fonticola" "" "species" "Kampfer et al., 2015" "facultative anaerobe" "LPSN" "780873" "516590" "3221751" "10277639" 1.15 "112329006"
|
||||
"B_SERRT_GLSS" "Serratia glossinae" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "glossinae" "" "species" "Geiger et al., 2010" "likely facultative anaerobe" "LPSN" "788583" "516590" "780873" "10277639" 1.15 ""
|
||||
"B_SERRT_GRMS" "Serratia grimesii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "grimesii" "" "species" "Grimont et al., 1983" "likely facultative anaerobe" "LPSN" "780874" "516590" "3221760" "10277639" 1.5 "115005002"
|
||||
"B_SERRT_INHB" "Serratia inhibens" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "inhibens" "" "species" "Hennessy et al., 2020" "likely facultative anaerobe" "LPSN" "8235" "516590" "11420482" "10277639" 1.5 ""
|
||||
"B_SERRT_LQFC" "Serratia liquefaciens" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "liquefaciens" "" "species" "Bascomb et al., 1971" "aerobe" "LPSN" "780875" "516590" "3221757" "10277639" 1.15 "23787004"
|
||||
"B_SERRT_MRCS" "Serratia marcescens" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "marcescens" "" "species" "Bizio, 1823" "facultative anaerobe" "LPSN" "780876" "516590" "11108815" "10277639" 1.15 "1107201000112104,816049003,715354005,33522002"
|
||||
"B_SERRT_MRCS_MRCS" "Serratia marcescens marcescens" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "marcescens" "marcescens" "subspecies" "Ajithkumar et al., 2003" "LPSN" "780877" "780876" "780876" "11108815" 1.15 ""
|
||||
"B_SERRT_MRCS_SKNS" "Serratia marcescens sakuensis" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "marcescens" "sakuensis" "subspecies" "Ajithkumar et al., 2003" "LPSN" "780878" "780876" "780876" "11108815" 1.15 ""
|
||||
"B_SERRT_MRNR" "Serratia marinorubra" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "marinorubra" "" "species" "ZoBell et al., 1944" "likely facultative anaerobe" "LPSN" "780879" "516590" "780886" "10277639" 1.15 ""
|
||||
"B_SERRT_MCRH" "Serratia microhaemolytica" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "microhaemolytica" "" "species" "Wang et al., 2020" "likely facultative anaerobe" "LPSN" "5475" "516590" "10277639" 1.5 ""
|
||||
"B_SERRT_MYTS" "Serratia myotis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "myotis" "" "species" "Garcia-Fraile et al., 2015" "likely facultative anaerobe" "LPSN" "792399" "516590" "7800724" "10277639" 1.5 ""
|
||||
"B_SERRT_NMTD" "Serratia nematodiphila" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "nematodiphila" "" "species" "Zhang et al., 2009" "facultative anaerobe" "LPSN" "788013" "516590" "7536261" "10277639" 1.5 "450415000"
|
||||
"B_SERRT_NEVE" "Serratia nevei" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "nevei" "" "species" "Cho et al., 2020" "facultative anaerobe" "LPSN" "3577" "516590" "11514719" "10277639" 1.5 ""
|
||||
"B_SERRT_ODRF" "Serratia odorifera" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "odorifera" "" "species" "Grimont et al., 1978" "facultative anaerobe" "LPSN" "780880" "516590" "3221753" "10277639" 1.15 "10413007"
|
||||
"B_SERRT_ORYZ" "Serratia oryzae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "oryzae" "" "species" "Zhang et al., 2017" "aerobe" "LPSN" "795715" "516590" "9741294" "10277639" 1.5 ""
|
||||
"B_SERRT_PLYM" "Serratia plymuthica" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "plymuthica" "" "species" "Breed et al., 1948" "facultative anaerobe" "LPSN" "780882" "516590" "11705128" "10277639" 1.15 "28955009"
|
||||
"B_SERRT_PRTM" "Serratia proteamaculans" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "proteamaculans" "" "species" "Grimont et al., 1978" "aerobe" "LPSN" "780883" "516590" "10792718" "10277639" 1.15 "116135003"
|
||||
"B_SERRT_PRTM_PRTM" "Serratia proteamaculans proteamaculans" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "proteamaculans" "proteamaculans" "subspecies" "Grimont et al., 1983" "LPSN" "784883" "780883" "780883" "10792718" 1.15 ""
|
||||
"B_SERRT_PRTM_QNVR" "Serratia proteamaculans quinovora" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "proteamaculans" "quinovora" "subspecies" "Grimont et al., 1983" "LPSN" "780884" "780883" "780885" "10792718" 1.15 ""
|
||||
"B_SERRT_QUNVR" "Serratia quinivora" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "quinivora" "" "species" "Ashelford et al., 2002" "likely facultative anaerobe" "LPSN" "798526" "516590" "780885" "10277639" 1.5 ""
|
||||
"B_SERRT_QNVR" "Serratia quinivorans" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "quinivorans" "" "species" "Ashelford et al., 2002" "facultative anaerobe" "LPSN" "780885" "516590" "7966511" "10277639" 1.5 "438199009"
|
||||
"B_SERRT_RHZS" "Serratia rhizosphaerae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "rhizosphaerae" "" "species" "Son et al., 2021" "likely facultative anaerobe" "LPSN" "3497" "516590" "10277639" 1.5 ""
|
||||
"B_SERRT_RUBD" "Serratia rubidaea" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "rubidaea" "" "species" "Ewing et al., 1973" "facultative anaerobe" "LPSN" "780886" "516590" "3221746" "10277639" 1.15 "55825002"
|
||||
"B_SERRT_SRFC" "Serratia surfactantfaciens" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "surfactantfaciens" "" "species" "likely facultative anaerobe" "GBIF" "516590" "11195972" "10277639" 1.5 ""
|
||||
"B_SERRT_SYMB" "Serratia symbiotica" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "symbiotica" "" "species" "Sabri et al., 2011" "likely facultative anaerobe" "LPSN" "789453" "516590" "11183666" "10277639" 1.5 ""
|
||||
"B_SERRT_URLY" "Serratia ureilytica" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "ureilytica" "" "species" "Bhadra et al., 2005" "facultative anaerobe" "LPSN" "780887" "516590" "3221745" "10277639" 1.5 "450416004"
|
||||
"B_SERRT_VSPR" "Serratia vespertilionis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "vespertilionis" "" "species" "Garcia-Fraile et al., 2015" "likely facultative anaerobe" "LPSN" "792400" "516590" "8211994" "10277639" 1.5 "718823003"
|
||||
"B_SERRT" "Serratia" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "" "" "genus" "Bizio, 1823" "facultative anaerobe" "LPSN" "516590" "2057" "10277639" "10405611" "3221744" 1 "42025004"
|
||||
"B_SERRT_AQTL" "Serratia aquatilis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "aquatilis" "" "species" "Kampfer et al., 2016" "facultative anaerobe" "LPSN" "793778" "516590" "9100314" "10277639" 1 ""
|
||||
"B_SERRT_BCKL" "Serratia bockelmannii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "bockelmannii" "" "species" "Cho et al., 2020" "facultative anaerobe" "LPSN" "3576" "516590" "11609327" "10277639" 1 ""
|
||||
"B_SERRT_ENTM" "Serratia entomophila" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "entomophila" "" "species" "Grimont et al., 1988" "aerobe" "LPSN" "780871" "516590" "3221761" "10277639" 1 "76656001"
|
||||
"B_SERRT_FICR" "Serratia ficaria" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "ficaria" "" "species" "Garcia-Fraile et al., 2020" "facultative anaerobe" "LPSN" "780872" "516590" "3221758" "10277639" 1 "802004"
|
||||
"B_SERRT_FNTC" "Serratia fonticola" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "fonticola" "" "species" "Kampfer et al., 2015" "facultative anaerobe" "LPSN" "780873" "516590" "3221751" "10277639" 1 "112329006"
|
||||
"B_SERRT_GLSS" "Serratia glossinae" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "glossinae" "" "species" "Geiger et al., 2010" "likely facultative anaerobe" "LPSN" "788583" "516590" "780873" "10277639" 1 ""
|
||||
"B_SERRT_GRMS" "Serratia grimesii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "grimesii" "" "species" "Grimont et al., 1983" "likely facultative anaerobe" "LPSN" "780874" "516590" "3221760" "10277639" 1 "115005002"
|
||||
"B_SERRT_INHB" "Serratia inhibens" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "inhibens" "" "species" "Hennessy et al., 2020" "likely facultative anaerobe" "LPSN" "8235" "516590" "11420482" "10277639" 1 ""
|
||||
"B_SERRT_LQFC" "Serratia liquefaciens" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "liquefaciens" "" "species" "Bascomb et al., 1971" "aerobe" "LPSN" "780875" "516590" "3221757" "10277639" 1 "23787004"
|
||||
"B_SERRT_MRCS" "Serratia marcescens" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "marcescens" "" "species" "Bizio, 1823" "facultative anaerobe" "LPSN" "780876" "516590" "11108815" "10277639" 1 "1107201000112104,816049003,715354005,33522002"
|
||||
"B_SERRT_MRCS_MRCS" "Serratia marcescens marcescens" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "marcescens" "marcescens" "subspecies" "Ajithkumar et al., 2003" "LPSN" "780877" "780876" "780876" "11108815" 1 ""
|
||||
"B_SERRT_MRCS_SKNS" "Serratia marcescens sakuensis" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "marcescens" "sakuensis" "subspecies" "Ajithkumar et al., 2003" "LPSN" "780878" "780876" "780876" "11108815" 1 ""
|
||||
"B_SERRT_MRNR" "Serratia marinorubra" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "marinorubra" "" "species" "ZoBell et al., 1944" "likely facultative anaerobe" "LPSN" "780879" "516590" "780886" "10277639" 1 ""
|
||||
"B_SERRT_MCRH" "Serratia microhaemolytica" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "microhaemolytica" "" "species" "Wang et al., 2020" "likely facultative anaerobe" "LPSN" "5475" "516590" "10277639" 1 ""
|
||||
"B_SERRT_MYTS" "Serratia myotis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "myotis" "" "species" "Garcia-Fraile et al., 2015" "likely facultative anaerobe" "LPSN" "792399" "516590" "7800724" "10277639" 1 ""
|
||||
"B_SERRT_NMTD" "Serratia nematodiphila" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "nematodiphila" "" "species" "Zhang et al., 2009" "facultative anaerobe" "LPSN" "788013" "516590" "7536261" "10277639" 1 "450415000"
|
||||
"B_SERRT_NEVE" "Serratia nevei" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "nevei" "" "species" "Cho et al., 2020" "facultative anaerobe" "LPSN" "3577" "516590" "11514719" "10277639" 1 ""
|
||||
"B_SERRT_ODRF" "Serratia odorifera" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "odorifera" "" "species" "Grimont et al., 1978" "facultative anaerobe" "LPSN" "780880" "516590" "3221753" "10277639" 1 "10413007"
|
||||
"B_SERRT_ORYZ" "Serratia oryzae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "oryzae" "" "species" "Zhang et al., 2017" "aerobe" "LPSN" "795715" "516590" "9741294" "10277639" 1 ""
|
||||
"B_SERRT_PLYM" "Serratia plymuthica" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "plymuthica" "" "species" "Breed et al., 1948" "facultative anaerobe" "LPSN" "780882" "516590" "11705128" "10277639" 1 "28955009"
|
||||
"B_SERRT_PRTM" "Serratia proteamaculans" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "proteamaculans" "" "species" "Grimont et al., 1978" "aerobe" "LPSN" "780883" "516590" "10792718" "10277639" 1 "116135003"
|
||||
"B_SERRT_PRTM_PRTM" "Serratia proteamaculans proteamaculans" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "proteamaculans" "proteamaculans" "subspecies" "Grimont et al., 1983" "LPSN" "784883" "780883" "780883" "10792718" 1 ""
|
||||
"B_SERRT_PRTM_QNVR" "Serratia proteamaculans quinovora" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "proteamaculans" "quinovora" "subspecies" "Grimont et al., 1983" "LPSN" "780884" "780883" "780885" "10792718" 1 ""
|
||||
"B_SERRT_QUNVR" "Serratia quinivora" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "quinivora" "" "species" "Ashelford et al., 2002" "likely facultative anaerobe" "LPSN" "798526" "516590" "780885" "10277639" 1 ""
|
||||
"B_SERRT_QNVR" "Serratia quinivorans" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "quinivorans" "" "species" "Ashelford et al., 2002" "facultative anaerobe" "LPSN" "780885" "516590" "7966511" "10277639" 1 "438199009"
|
||||
"B_SERRT_RHZS" "Serratia rhizosphaerae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "rhizosphaerae" "" "species" "Son et al., 2021" "likely facultative anaerobe" "LPSN" "3497" "516590" "10277639" 1 ""
|
||||
"B_SERRT_RUBD" "Serratia rubidaea" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "rubidaea" "" "species" "Ewing et al., 1973" "facultative anaerobe" "LPSN" "780886" "516590" "3221746" "10277639" 1 "55825002"
|
||||
"B_SERRT_SRFC" "Serratia surfactantfaciens" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "surfactantfaciens" "" "species" "likely facultative anaerobe" "GBIF" "516590" "11195972" "10277639" 1 ""
|
||||
"B_SERRT_SYMB" "Serratia symbiotica" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "symbiotica" "" "species" "Sabri et al., 2011" "likely facultative anaerobe" "LPSN" "789453" "516590" "11183666" "10277639" 1 ""
|
||||
"B_SERRT_URLY" "Serratia ureilytica" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "ureilytica" "" "species" "Bhadra et al., 2005" "facultative anaerobe" "LPSN" "780887" "516590" "3221745" "10277639" 1 "450416004"
|
||||
"B_SERRT_VSPR" "Serratia vespertilionis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Serratia" "vespertilionis" "" "species" "Garcia-Fraile et al., 2015" "likely facultative anaerobe" "LPSN" "792400" "516590" "8211994" "10277639" 1 "718823003"
|
||||
"F_SRTLC" "Sertulicium" "accepted" "Fungi" "Basidiomycota" "Agaricomycetes" "Trechisporales" "" "Sertulicium" "" "" "genus" "Spirin et al." "GBIF" "501301" "11870780" "529" 2 ""
|
||||
"F_SRTLC_GRNL" "Sertulicium granulosa" "unknown" "Fungi" "Basidiomycota" "Agaricomycetes" "Trechisporales" "" "Sertulicium" "granulosa" "" "species" "manually added" "11870780" 2 ""
|
||||
"B_SSSLB" "Sessilibacter" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Cellvibrionales" "Cellvibrionaceae" "Sessilibacter" "" "" "genus" "Liu et al., 2022" "LPSN" "28831" "2005" "9546507" 2 ""
|
||||
@@ -78307,42 +78307,42 @@
|
||||
"B_YEOSN" "Yeosuana" "accepted" "Bacteria" "Bacteroidota" "Flavobacteriia" "Flavobacteriales" "Flavobacteriaceae" "Yeosuana" "" "" "genus" "Kwon et al., 2006" "aerobe" "LPSN" "517391" "524" "3228739" "4898201" 2 ""
|
||||
"B_YEOSN_ARMT" "Yeosuana aromativorans" "accepted" "Bacteria" "Bacteroidota" "Flavobacteriia" "Flavobacteriales" "Flavobacteriaceae" "Yeosuana" "aromativorans" "" "species" "Kwon et al., 2006" "aerobe" "LPSN" "785219" "517391" "3228740" "3228739" 2 ""
|
||||
"B_YEOSN_MARN" "Yeosuana marina" "accepted" "Bacteria" "Bacteroidota" "Flavobacteriia" "Flavobacteriales" "Flavobacteriaceae" "Yeosuana" "marina" "" "species" "Zhang et al., 2020" "aerobe" "LPSN" "14268" "517391" "11437682" "3228739" 2 ""
|
||||
"B_YERSN" "Yersinia" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "" "" "genus" "Van Loghem, 1944" "facultative anaerobe" "LPSN" "516947" "2057" "10405611" 1.15 "4668009,415864001,116502002,428139002,116503007"
|
||||
"B_YERSN_ALDV" "Yersinia aldovae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "aldovae" "" "species" "Bercovier et al., 1984" "facultative anaerobe" "LPSN" "783197" "516947" "5427629" 1.5 "91246002"
|
||||
"B_YERSN_ALKS" "Yersinia aleksiciae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "aleksiciae" "" "species" "Sprague et al., 2005" "facultative anaerobe" "LPSN" "783198" "516947" "5427624" 1.5 "450391006"
|
||||
"B_YERSN_ALST" "Yersinia alsatica" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "alsatica" "" "species" "Le Guern et al., 2020" "likely facultative anaerobe" "LPSN" "14092" "516947" 1.5 ""
|
||||
"B_YERSN_ARTS" "Yersinia artesiana" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "artesiana" "" "species" "Le Guern et al., 2020" "likely facultative anaerobe" "LPSN" "14093" "516947" 1.5 ""
|
||||
"B_YERSN_BRCV" "Yersinia bercovieri" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "bercovieri" "" "species" "Wauters et al., 1988" "facultative anaerobe" "LPSN" "785220" "516947" "5427625" 1.15 "103434007"
|
||||
"B_YERSN_CANR" "Yersinia canariae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "canariae" "" "species" "Nguyen et al., 2020" "likely facultative anaerobe" "LPSN" "5910" "516947" "11191714" 1.25 ""
|
||||
"B_YERSN_ENTR" "Yersinia enterocolitica" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "enterocolitica" "" "species" "Frederiksen, 1964" "facultative anaerobe" "LPSN" "785221" "516947" "10934911" 1.15 "65255000,415854005"
|
||||
"B_YERSN_ENTR_ENTR" "Yersinia enterocolitica enterocolitica" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "enterocolitica" "enterocolitica" "subspecies" "Neubauer et al., 2000" "LPSN" "783199" "785221" "7234528" "10934911" 1.15 ""
|
||||
"B_YERSN_ENTR_PLRC" "Yersinia enterocolitica palearctica" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "enterocolitica" "palearctica" "subspecies" "Neubauer et al., 2000" "LPSN" "783200" "785221" "5427627" "10934911" 1.15 ""
|
||||
"B_YERSN_ENTM" "Yersinia entomophaga" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "entomophaga" "" "species" "Hurst et al., 2011" "aerobe" "LPSN" "789166" "516947" "8016687" 1.5 ""
|
||||
"B_YERSN_FRDR" "Yersinia frederiksenii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "frederiksenii" "" "species" "Ursing et al., 1981" "facultative anaerobe" "LPSN" "785222" "516947" "5427634" 1.15 "85159008"
|
||||
"B_YERSN_HBRN" "Yersinia hibernica" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "hibernica" "" "species" "Nguyen et al., 2019" "aerobe" "LPSN" "801277" "516947" "10671741" 1.5 ""
|
||||
"B_YERSN_INTR" "Yersinia intermedia" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "intermedia" "" "species" "Brenner et al., 1981" "facultative anaerobe" "LPSN" "785223" "516947" "5427630" 1.15 "10334001"
|
||||
"B_YERSN_KRST" "Yersinia kristensenii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "kristensenii" "" "species" "Bercovier et al., 1981" "facultative anaerobe" "LPSN" "785224" "516947" "11098760" 1.15 "91042006"
|
||||
"B_YERSN_KRST_KRST" "Yersinia kristensenii kristensenii" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "kristensenii" "kristensenii" "subspecies" "Cunningham et al., 2019" "LPSN" "6041" "785224" "785224" "11098760" 1.15 ""
|
||||
"B_YERSN_KRST_RCHS" "Yersinia kristensenii rochesterensis" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "kristensenii" "rochesterensis" "subspecies" "Cunningham et al., 2019" "LPSN" "6032" "785224" "17336" "11098760" 1.15 ""
|
||||
"B_YERSN_MSSL" "Yersinia massiliensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "massiliensis" "" "species" "Souza et al., 2011" "aerobe" "LPSN" "787295" "516947" "7605113" 1.5 "446489003"
|
||||
"B_YERSN_MLLR" "Yersinia mollaretii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "mollaretii" "" "species" "Wauters et al., 1988" "facultative anaerobe" "LPSN" "785225" "516947" "5427633" 1.15 "103435008"
|
||||
"B_YERSN_NURM" "Yersinia nurmii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "nurmii" "" "species" "Murros-Kontiainen et al., 2011" "aerobe" "LPSN" "789521" "516947" "7583359" 1.5 ""
|
||||
"B_YERSN_OCCT" "Yersinia occitanica" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "occitanica" "" "species" "Le Guern et al., 2020" "likely facultative anaerobe" "LPSN" "14094" "516947" "17336" 1.5 ""
|
||||
"B_YERSN_PKKN" "Yersinia pekkanenii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "pekkanenii" "" "species" "Murros-Kontiainen et al., 2011" "aerobe" "LPSN" "789522" "516947" "8418394" 1.5 ""
|
||||
"B_YERSN_PSTS" "Yersinia pestis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "pestis" "" "species" "Van Loghem, 1944" "aerobe" "LPSN" "785226" "516947" "5427631" 1.15 "54365000"
|
||||
"B_YERSN_PHLM" "Yersinia philomiragia" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "philomiragia" "" "species" "Jensen et al., 1969" "likely facultative anaerobe" "LPSN" "783201" "516947" "776319" 1.15 ""
|
||||
"B_YERSN_PRXM" "Yersinia proxima" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "proxima" "" "species" "Le Guern et al., 2020" "likely facultative anaerobe" "LPSN" "14095" "516947" 1.5 ""
|
||||
"B_YERSN_PSDT" "Yersinia pseudotuberculosis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "pseudotuberculosis" "" "species" "Smith et al., 1965" "facultative anaerobe" "LPSN" "783202" "516947" "5427620" "5427631" 1.15 "90530002"
|
||||
"B_YERSN_PSDT-C" "Yersinia pseudotuberculosis complex" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "pseudotuberculosis complex" "" "species group" "facultative anaerobe" "manually added" "2057" "10405611" 2 ""
|
||||
"B_YERSN_PSDT_PSTS" "Yersinia pseudotuberculosis pestis" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "pseudotuberculosis" "pestis" "subspecies" "Bercovier et al., 1981" "LPSN" "798529" "783202" "785226" "5427620" 1.15 ""
|
||||
"B_YERSN_PSDT_PSDT" "Yersinia pseudotuberculosis pseudotuberculosis" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "pseudotuberculosis" "pseudotuberculosis" "subspecies" "Bercovier et al., 1981" "LPSN" "798530" "783202" "783202" "5427620" 1.15 ""
|
||||
"B_YERSN_RCHS" "Yersinia rochesterensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "rochesterensis" "" "species" "Nguyen et al., 2021" "likely facultative anaerobe" "LPSN" "17336" "516947" "11652009" 1.5 ""
|
||||
"B_YERSN_ROHD" "Yersinia rohdei" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "rohdei" "" "species" "Aleksic et al., 1987" "aerobe" "LPSN" "783203" "516947" "5427632" 1.15 "87145000"
|
||||
"B_YERSN_RCKR" "Yersinia ruckeri" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "ruckeri" "" "species" "Ewing et al., 1978" "aerobe" "LPSN" "785227" "516947" "5427635" 1.15 "64125009"
|
||||
"B_YERSN_SMLS" "Yersinia similis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "similis" "" "species" "Sprague et al., 2008" "aerobe" "LPSN" "783204" "516947" "7917540" 1.5 "450392004"
|
||||
"B_YERSN_THRC" "Yersinia thracica" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "thracica" "" "species" "Le Guern et al., 2020" "likely facultative anaerobe" "LPSN" "14096" "516947" 1.5 ""
|
||||
"B_YERSN_VSTN" "Yersinia vastinensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "vastinensis" "" "species" "Le Guern et al., 2020" "likely facultative anaerobe" "LPSN" "14097" "516947" 1.5 ""
|
||||
"B_YERSN_WTRS" "Yersinia wautersii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "wautersii" "" "species" "Savin et al., 2014" "likely facultative anaerobe" "LPSN" "791948" "516947" "7976890" 1.5 ""
|
||||
"B_YERSN" "Yersinia" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "" "" "genus" "Van Loghem, 1944" "facultative anaerobe" "LPSN" "516947" "2057" "10405611" 1 "4668009,415864001,116502002,428139002,116503007"
|
||||
"B_YERSN_ALDV" "Yersinia aldovae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "aldovae" "" "species" "Bercovier et al., 1984" "facultative anaerobe" "LPSN" "783197" "516947" "5427629" 1 "91246002"
|
||||
"B_YERSN_ALKS" "Yersinia aleksiciae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "aleksiciae" "" "species" "Sprague et al., 2005" "facultative anaerobe" "LPSN" "783198" "516947" "5427624" 1 "450391006"
|
||||
"B_YERSN_ALST" "Yersinia alsatica" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "alsatica" "" "species" "Le Guern et al., 2020" "likely facultative anaerobe" "LPSN" "14092" "516947" 1 ""
|
||||
"B_YERSN_ARTS" "Yersinia artesiana" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "artesiana" "" "species" "Le Guern et al., 2020" "likely facultative anaerobe" "LPSN" "14093" "516947" 1 ""
|
||||
"B_YERSN_BRCV" "Yersinia bercovieri" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "bercovieri" "" "species" "Wauters et al., 1988" "facultative anaerobe" "LPSN" "785220" "516947" "5427625" 1 "103434007"
|
||||
"B_YERSN_CANR" "Yersinia canariae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "canariae" "" "species" "Nguyen et al., 2020" "likely facultative anaerobe" "LPSN" "5910" "516947" "11191714" 1 ""
|
||||
"B_YERSN_ENTR" "Yersinia enterocolitica" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "enterocolitica" "" "species" "Frederiksen, 1964" "facultative anaerobe" "LPSN" "785221" "516947" "10934911" 1 "65255000,415854005"
|
||||
"B_YERSN_ENTR_ENTR" "Yersinia enterocolitica enterocolitica" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "enterocolitica" "enterocolitica" "subspecies" "Neubauer et al., 2000" "LPSN" "783199" "785221" "7234528" "10934911" 1 ""
|
||||
"B_YERSN_ENTR_PLRC" "Yersinia enterocolitica palearctica" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "enterocolitica" "palearctica" "subspecies" "Neubauer et al., 2000" "LPSN" "783200" "785221" "5427627" "10934911" 1 ""
|
||||
"B_YERSN_ENTM" "Yersinia entomophaga" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "entomophaga" "" "species" "Hurst et al., 2011" "aerobe" "LPSN" "789166" "516947" "8016687" 1 ""
|
||||
"B_YERSN_FRDR" "Yersinia frederiksenii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "frederiksenii" "" "species" "Ursing et al., 1981" "facultative anaerobe" "LPSN" "785222" "516947" "5427634" 1 "85159008"
|
||||
"B_YERSN_HBRN" "Yersinia hibernica" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "hibernica" "" "species" "Nguyen et al., 2019" "aerobe" "LPSN" "801277" "516947" "10671741" 1 ""
|
||||
"B_YERSN_INTR" "Yersinia intermedia" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "intermedia" "" "species" "Brenner et al., 1981" "facultative anaerobe" "LPSN" "785223" "516947" "5427630" 1 "10334001"
|
||||
"B_YERSN_KRST" "Yersinia kristensenii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "kristensenii" "" "species" "Bercovier et al., 1981" "facultative anaerobe" "LPSN" "785224" "516947" "11098760" 1 "91042006"
|
||||
"B_YERSN_KRST_KRST" "Yersinia kristensenii kristensenii" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "kristensenii" "kristensenii" "subspecies" "Cunningham et al., 2019" "LPSN" "6041" "785224" "785224" "11098760" 1 ""
|
||||
"B_YERSN_KRST_RCHS" "Yersinia kristensenii rochesterensis" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "kristensenii" "rochesterensis" "subspecies" "Cunningham et al., 2019" "LPSN" "6032" "785224" "17336" "11098760" 1 ""
|
||||
"B_YERSN_MSSL" "Yersinia massiliensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "massiliensis" "" "species" "Souza et al., 2011" "aerobe" "LPSN" "787295" "516947" "7605113" 1 "446489003"
|
||||
"B_YERSN_MLLR" "Yersinia mollaretii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "mollaretii" "" "species" "Wauters et al., 1988" "facultative anaerobe" "LPSN" "785225" "516947" "5427633" 1 "103435008"
|
||||
"B_YERSN_NURM" "Yersinia nurmii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "nurmii" "" "species" "Murros-Kontiainen et al., 2011" "aerobe" "LPSN" "789521" "516947" "7583359" 1 ""
|
||||
"B_YERSN_OCCT" "Yersinia occitanica" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "occitanica" "" "species" "Le Guern et al., 2020" "likely facultative anaerobe" "LPSN" "14094" "516947" "17336" 1 ""
|
||||
"B_YERSN_PKKN" "Yersinia pekkanenii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "pekkanenii" "" "species" "Murros-Kontiainen et al., 2011" "aerobe" "LPSN" "789522" "516947" "8418394" 1 ""
|
||||
"B_YERSN_PSTS" "Yersinia pestis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "pestis" "" "species" "Van Loghem, 1944" "aerobe" "LPSN" "785226" "516947" "5427631" 1 "54365000"
|
||||
"B_YERSN_PHLM" "Yersinia philomiragia" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "philomiragia" "" "species" "Jensen et al., 1969" "likely facultative anaerobe" "LPSN" "783201" "516947" "776319" 1 ""
|
||||
"B_YERSN_PRXM" "Yersinia proxima" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "proxima" "" "species" "Le Guern et al., 2020" "likely facultative anaerobe" "LPSN" "14095" "516947" 1 ""
|
||||
"B_YERSN_PSDT" "Yersinia pseudotuberculosis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "pseudotuberculosis" "" "species" "Smith et al., 1965" "facultative anaerobe" "LPSN" "783202" "516947" "5427620" "5427631" 1 "90530002"
|
||||
"B_YERSN_PSDT-C" "Yersinia pseudotuberculosis complex" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "pseudotuberculosis complex" "" "species group" "facultative anaerobe" "manually added" "2057" "10405611" 1 ""
|
||||
"B_YERSN_PSDT_PSTS" "Yersinia pseudotuberculosis pestis" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "pseudotuberculosis" "pestis" "subspecies" "Bercovier et al., 1981" "LPSN" "798529" "783202" "785226" "5427620" 1 ""
|
||||
"B_YERSN_PSDT_PSDT" "Yersinia pseudotuberculosis pseudotuberculosis" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "pseudotuberculosis" "pseudotuberculosis" "subspecies" "Bercovier et al., 1981" "LPSN" "798530" "783202" "783202" "5427620" 1 ""
|
||||
"B_YERSN_RCHS" "Yersinia rochesterensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "rochesterensis" "" "species" "Nguyen et al., 2021" "likely facultative anaerobe" "LPSN" "17336" "516947" "11652009" 1 ""
|
||||
"B_YERSN_ROHD" "Yersinia rohdei" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "rohdei" "" "species" "Aleksic et al., 1987" "aerobe" "LPSN" "783203" "516947" "5427632" 1 "87145000"
|
||||
"B_YERSN_RCKR" "Yersinia ruckeri" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "ruckeri" "" "species" "Ewing et al., 1978" "aerobe" "LPSN" "785227" "516947" "5427635" 1 "64125009"
|
||||
"B_YERSN_SMLS" "Yersinia similis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "similis" "" "species" "Sprague et al., 2008" "aerobe" "LPSN" "783204" "516947" "7917540" 1 "450392004"
|
||||
"B_YERSN_THRC" "Yersinia thracica" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "thracica" "" "species" "Le Guern et al., 2020" "likely facultative anaerobe" "LPSN" "14096" "516947" 1 ""
|
||||
"B_YERSN_VSTN" "Yersinia vastinensis" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "vastinensis" "" "species" "Le Guern et al., 2020" "likely facultative anaerobe" "LPSN" "14097" "516947" 1 ""
|
||||
"B_YERSN_WTRS" "Yersinia wautersii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "Yersinia" "wautersii" "" "species" "Savin et al., 2014" "likely facultative anaerobe" "LPSN" "791948" "516947" "7976890" 1 ""
|
||||
"B_[FAM]_YERSINIC" "Yersiniaceae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Yersiniaceae" "" "" "" "family" "Adeolu et al., 2016" "LPSN" "2057" "5188" "10405611" "10801383" 2 ""
|
||||
"B_YIMLL" "Yimella" "accepted" "Bacteria" "Actinomycetota" "Actinomycetes" "Micrococcales" "Dermacoccaceae" "Yimella" "" "" "genus" "Tang et al., 2010" "aerobe" "LPSN" "517952" "391" "8053109" 2 ""
|
||||
"B_YIMLL_INDC" "Yimella indica" "accepted" "Bacteria" "Actinomycetota" "Actinomycetes" "Micrococcales" "Dermacoccaceae" "Yimella" "indica" "" "species" "aerobe" "GBIF" "517952" "11129462" "8053109" 2 ""
|
||||
|
||||
Binary file not shown.
@@ -9,11 +9,9 @@
|
||||
* Integrates with **WHONET**, ATC, **EARS-Net**, PubChem, **LOINC**, **SNOMED CT**, and **NCBI**
|
||||
* 100% free of costs and dependencies, highly suitable for places with **limited resources**
|
||||
|
||||
<a href="https://chatgpt.com/g/g-M4UNLwFi5-amr-for-r-assistant"><img src="AMRforRGPT.svg" style="min-width: 300px; width: 10%;" /></a>
|
||||
|
||||
<div style="display: flex; font-size: 0.8em;">
|
||||
<p style="text-align:left; width: 50%;"><small><a href="https://msberends.github.io/AMR/">https://msberends.github.io/AMR</a></small></p>
|
||||
<p style="text-align:right; width: 50%;"><small><a href="https://doi.org/10.18637/jss.v104.i03" target="_blank">https://doi.org/10.18637/jss.v104.i03</a></small></p>
|
||||
<p style="text-align:left; width: 50%;"><small><a href="https://msberends.github.io/AMR/">https://msberends.github.io/AMR</a></small></p>
|
||||
<p style="text-align:right; width: 50%;"><small><a href="https://doi.org/10.18637/jss.v104.i03" target="_blank">https://doi.org/10.18637/jss.v104.i03</a></small></p>
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</div>
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<a href="./reference/clinical_breakpoints.html#response-from-clsi-and-eucast"><img src="./endorsement_clsi_eucast.jpg" class="endorse_img" align="right" height="120" /></a>
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y="60.001202"
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id="tspan1070">EARS-Net</tspan><tspan
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y="60.001202"
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id="tspan1071">, PubChem, </tspan><tspan
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style="font-variant:normal;font-weight:700;font-stretch:condensed;font-size:8.3335px;font-family:'Helvetica Neue';writing-mode:lr-tb;fill:#1d1d1b;fill-opacity:1;fill-rule:nonzero;stroke:none"
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x="184.81203 188.67044 193.30386 195.4539 200.23734 204.71243"
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y="60.001202"
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id="tspan1072">LOINC </tspan><tspan
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style="font-variant:normal;font-weight:300;font-stretch:normal;font-size:8.3335px;font-family:'Helvetica Neue';writing-mode:lr-tb;fill:#1d1d1b;fill-opacity:1;fill-rule:nonzero;stroke:none"
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||||
x="206.71246 211.03755 215.51265 220.29607"
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y="60.001202"
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id="tspan1073">and </tspan><tspan
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style="font-variant:normal;font-weight:700;font-stretch:condensed;font-size:8.3335px;font-family:'Helvetica Neue';writing-mode:lr-tb;fill:#1d1d1b;fill-opacity:1;fill-rule:nonzero;stroke:none"
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x="222.61279 226.93787 231.7213 236.35472 242.52151 246.52994 251.31335 253.3134 257.78848"
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||||
y="60.001202"
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id="tspan1074">SNOMED CT</tspan><tspan
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y="75.001503"
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id="tspan1075">Works on Windows, macOS and Linux with </tspan><tspan
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style="font-variant:normal;font-weight:700;font-stretch:condensed;font-size:8.3335px;font-family:'Helvetica Neue';writing-mode:lr-tb;fill:#1d1d1b;fill-opacity:1;fill-rule:nonzero;stroke:none"
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x="158.09566 162.10408 164.10411 166.10416 168.1042 171.80428 175.66267 178.43773 182.1378 184.13785 188.13792 192.30467 196.00476 198.00479 202.00487 204.47159 206.47163"
|
||||
y="75.001503"
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id="tspan1076">all versions of R</tspan><tspan
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x="211.10506 213.42177 217.43018 218.97188 223.44698 227.77205 232.09714 234.41385 239.97231 243.05569 247.68912 250.00583 254.63927 256.95596 261.28107 265.75613"
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y="75.001503"
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id="tspan1077"> since R-3.0 and</tspan><tspan
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y="85.001701"
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id="tspan1078">is completely </tspan><tspan
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y="85.001701"
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y="85.001701"
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id="tspan1080">, highly suitable for places with </tspan><tspan
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style="font-variant:normal;font-weight:700;font-stretch:condensed;font-size:8.3335px;font-family:'Helvetica Neue';writing-mode:lr-tb;fill:#1d1d1b;fill-opacity:1;fill-rule:nonzero;stroke:none"
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@@ -28,8 +28,6 @@ The `AMR` package for R is an incredible tool for antimicrobial resistance (AMR)
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||||
The best way is to access R directly from Python with the help of `rpy2`, a simple yet powerful Python package. You can easily call functions from the `AMR` package to process your own data in your own Python environment. This post will guide you through setting up `rpy2` and show you how to use R functions from `AMR` in Python to supercharge your antimicrobial resistance analysis.
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||||
<a href="https://chatgpt.com/g/g-M4UNLwFi5-amr-for-r-assistant"><img src="../AMRforRGPT.svg" style="min-width: 300px; width: 10%;" /></a>
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# What is `rpy2`?
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||||
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||||
`rpy2` is a Python library that allows Python users to run R code within their Python scripts. Essentially, it acts as a bridge between the two languages, allowing you to tap into the rich ecosystem of R libraries (like `AMR`) while maintaining the flexibility of Python.
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Reference in new issue
Block a user