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Code Releases Activity

(v1.6.0.9061) age() update

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This commit is contained in:
dr. M.S. (Matthijs) Berends
2021-05-23 23:11:16 +02:00
parent fa2f5214b9
commit 07939b1a14
23 changed files with 71 additions and 48 deletions
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17
.github/workflows/check.yaml vendored
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@ -50,17 +50,22 @@ jobs:
fail-fast: false
matrix:
config:
# these are the developmental version of R - we allow those tests to fail
- {os: macOS-latest, r: 'devel', allowfail: true}
- {os: macOS-latest, r: 'release', allowfail: false}
- {os: macOS-latest, r: 'oldrel', allowfail: false}
- {os: windows-latest, r: 'devel', allowfail: true}
- {os: windows-latest, r: 'release', allowfail: false}
- {os: windows-latest, r: 'oldrel', allowfail: false}
- {os: ubuntu-20.04, r: 'devel', allowfail: true, rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
# these are the current release of R
- {os: macOS-latest, r: 'release', allowfail: false}
- {os: windows-latest, r: 'release', allowfail: false}
- {os: ubuntu-20.04, r: 'release', allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
# these are the previous release of R
- {os: macOS-latest, r: 'oldrel', allowfail: false}
- {os: windows-latest, r: 'oldrel', allowfail: false}
- {os: ubuntu-20.04, r: 'oldrel', allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
# test against all released versions of R >= 3.0, we support them all!
- {os: ubuntu-20.04, r: '4.1', allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
- {os: ubuntu-20.04, r: '4.0', allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
- {os: ubuntu-20.04, r: '3.6', allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}

8
.github/workflows/codecovr.yaml vendored
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@ -30,7 +30,6 @@ on:
- master
pull_request:
branches:
- premaster
- master
name: code-coverage
@ -76,10 +75,9 @@ jobs:
library(AMR)
library(tinytest)
library(covr)
source_files <- list.files("AMR/R", pattern = ".R$", full.names = TRUE)
test_files <- list.files("AMR/inst/tinytest", full.names = TRUE)
cov <- file_coverage(source_files = source_files, test_files = test_files, parent_env = asNamespace("AMR"), line_exclusions = list("AMR/R/atc_online.R", "AMR/R/mo_source.R", "AMR/R/translate.R", "AMR/R/resistance_predict.R", "AMR/R/aa_helper_functions.R", "AMR/R/aa_helper_pm_functions.R", "AMR/R/zzz.R"))
print(cov)
source_files <- list.files("R", pattern = ".R$", full.names = TRUE)
test_files <- list.files("inst/tinytest", full.names = TRUE)
cov <- file_coverage(source_files = source_files, test_files = test_files, parent_env = asNamespace("AMR"), line_exclusions = list("R/atc_online.R", "R/mo_source.R", "R/translate.R", "R/resistance_predict.R", "R/aa_helper_functions.R", "R/aa_helper_pm_functions.R", "R/zzz.R"))
attr(cov, which = "package") <- list(path = ".") # until https://github.com/r-lib/covr/issues/478 is solved
codecov(coverage = cov, quiet = FALSE)
shell: Rscript {0}