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(v1.6.0.9061) age() update

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dr. M.S. (Matthijs) Berends
2021-05-23 23:11:16 +02:00
parent fa2f5214b9
commit 07939b1a14
23 changed files with 71 additions and 48 deletions
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8
.github/workflows/codecovr.yaml vendored
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@@ -30,7 +30,6 @@ on:
- master
pull_request:
branches:
- premaster
- master
name: code-coverage
@@ -76,10 +75,9 @@ jobs:
library(AMR)
library(tinytest)
library(covr)
source_files <- list.files("AMR/R", pattern = ".R$", full.names = TRUE)
test_files <- list.files("AMR/inst/tinytest", full.names = TRUE)
cov <- file_coverage(source_files = source_files, test_files = test_files, parent_env = asNamespace("AMR"), line_exclusions = list("AMR/R/atc_online.R", "AMR/R/mo_source.R", "AMR/R/translate.R", "AMR/R/resistance_predict.R", "AMR/R/aa_helper_functions.R", "AMR/R/aa_helper_pm_functions.R", "AMR/R/zzz.R"))
print(cov)
source_files <- list.files("R", pattern = ".R$", full.names = TRUE)
test_files <- list.files("inst/tinytest", full.names = TRUE)
cov <- file_coverage(source_files = source_files, test_files = test_files, parent_env = asNamespace("AMR"), line_exclusions = list("R/atc_online.R", "R/mo_source.R", "R/translate.R", "R/resistance_predict.R", "R/aa_helper_functions.R", "R/aa_helper_pm_functions.R", "R/zzz.R"))
attr(cov, which = "package") <- list(path = ".") # until https://github.com/r-lib/covr/issues/478 is solved
codecov(coverage = cov, quiet = FALSE)
shell: Rscript {0}