mirror of
https://github.com/msberends/AMR.git
synced 2025-07-27 12:27:56 +02:00
Built site for AMR@3.0.0.9004: 0138e33
This commit is contained in:
github-actions
@ -111,16 +111,15 @@
|
||||
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 0.125 2 16 1 0.004 0.008 0.0005 0.125 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [9] 2 0.008 0.008 0.016 0.064 0.064 <=0.0002 0.001 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [17] 0.0005 0.5 0.002 0.002 0.125 8 <=0.0002 0.002 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [25] 0.064 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 1 0.064 2 0.016 128 0.001 0.004 0.008 64 0.064 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [11] 0.002 0.001 0.016 0.004 0.0005 0.0005 0.125 0.032 0.032 8 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [21] 2 8 0.008 0.0005 8 </span>
|
||||
<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 47 24 47 38 28 36 33 31 50 41 29 40 31 44 45 37 40 44 49 9 48 20 37 47 28</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 46 38 45 47 24 28 45 43 19 23 44 19 31 22 40 39 39 36 35 14 34 45 21 19 39</span>
|
||||
<span class="r-in"><span><span class="fu">random_sir</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'sir'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] S R R S S I S I S S I S R I I I I S I R I I I I R</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] I S R I R I S S S R R R I I R R I S R R S I S R I</span>
|
||||
<span class="r-in"><span></span></span>
|
||||
<span class="r-in"><span><span class="co"># add more skewedness, make more realistic by setting a bug and/or drug:</span></span></span>
|
||||
<span class="r-in"><span><span class="va">disks</span> <span class="op"><-</span> <span class="fu">random_disk</span><span class="op">(</span><span class="fl">100</span>, severity <span class="op">=</span> <span class="fl">2</span>, mo <span class="op">=</span> <span class="st">"Escherichia coli"</span>, ab <span class="op">=</span> <span class="st">"CIP"</span><span class="op">)</span></span></span>
|
||||
@ -133,30 +132,28 @@
|
||||
<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
|
||||
<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 0.0005 8 0.008 0.0002 0.0002 0.0002 0.0002 <=0.0001</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [9] 64 <=0.0001 1 0.5 0.001 0.5 0.001 0.0005 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [17] 0.016 0.008 0.002 0.032 <=0.0001 0.0002 0.001 0.0005 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [25] 0.001 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 2 0.032 32 0.5 0.001 0.008 0.002 4 0.0005 1 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [11] 0.001 1 8 0.002 0.25 2 0.016 0.004 0.25 0.125 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [21] 0.002 0.5 0.004 >=256 0.0005</span>
|
||||
<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] <=0.5 <=0.5 2 <=0.5 1 <=0.5 <=0.5 <=0.5 <=0.5 1 <=0.5 <=0.5</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [13] <=0.5 1 <=0.5 1 <=0.5 <=0.5 <=0.5 <=0.5 <=0.5 <=0.5 2 1 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [25] 2 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 4 >=8 4 >=8 4 >=8 4 4 4 4 4 4 >=8 >=8 4 >=8 4 4 4 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [20] 4 4 4 4 4 4 </span>
|
||||
<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 0.125 0.125 1 0.25 0.5 0.125 0.125 0.125 0.125 0.125 0.125 0.125</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [13] 1 0.125 0.5 1 0.125 0.25 0.5 0.25 0.5 0.5 0.5 0.125</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [25] 0.25 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] <=0.25 0.5 <=0.25 <=0.25 <=0.25 0.5 <=0.25 <=0.25 <=0.25 <=0.25</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [11] <=0.25 <=0.25 0.5 <=0.25 <=0.25 <=0.25 0.5 <=0.25 0.5 <=0.25</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [21] <=0.25 0.5 <=0.25 0.5 0.5 </span>
|
||||
<span class="r-in"><span></span></span>
|
||||
<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 32 21 23 21 14 22 25 29 29 28 34 34 34 33 13 28 33 34 32 25 18 26 13 21 33</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 33 26 16 27 29 33 24 17 17 15 16 26 26 14 17 29 25 25 24 32 32 34 18 31 10</span>
|
||||
<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 20 21 15 22 16 22 16 14 21 17 15 19 20 17 18 21 16 20 11 22 19 18 19 11 21</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 19 20 11 14 12 12 17 16 12 10 15 22 19 21 19 17 18 19 21 17 21 15 17 12 19</span>
|
||||
<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 29 25 31 17 29 21 31 34 33 31 29 30 23 20 33 20 34 32 35 26 26 26 34 30 33</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 27 24 31 22 35 28 26 32 24 18 35 33 24 28 33 25 35 25 32 24 26 20 23 22 33</span>
|
||||
<span class="r-in"><span><span class="co"># }</span></span></span>
|
||||
</code></pre></div>
|
||||
</div>
|
||||
|
||||
Reference in New Issue
Block a user