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faster determination of abx

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dr. M.S. (Matthijs) Berends
2019-05-20 19:12:41 +02:00
parent 6eb08a2ea3
commit 07d26cd485
25 changed files with 491 additions and 498 deletions
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2
tests/testthat/test-misc.R
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@ -48,4 +48,6 @@ test_that("looking up ab columns works", {
expect_warning(generate_warning_abs_missing(c("AMP", "AMX"), any = TRUE))
expect_warning(get_column_abx(septic_patients, hard_dependencies = "FUS"))
expect_warning(get_column_abx(septic_patients, soft_dependencies = "FUS"))
expect_error(get_column_abx(dplyr::rename(septic_patients, thisone = AMX), amox = "thisone", tmp = "thisone", verbose = TRUE))
expect_error(get_column_abx(dplyr::rename(septic_patients, thisone = AMX), amox = "thisone", tmp = "thisone", verbose = FALSE))
})