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(v2.1.1.9163) cleanup

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dr. M.S. (Matthijs) Berends
2025-02-27 14:04:29 +01:00
parent 68efddab3d
commit 07efc292bc
73 changed files with 2187 additions and 1715 deletions
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40
tests/testthat/test-pca.R
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@@ -27,25 +27,27 @@
# how to conduct AMR data analysis: https://msberends.github.io/AMR/ #
# ==================================================================== #
resistance_data <- structure(list(
order = c("Bacillales", "Enterobacterales", "Enterobacterales"),
genus = c("Staphylococcus", "Escherichia", "Klebsiella"),
AMC = c(0.00425, 0.13062, 0.10344),
CXM = c(0.00425, 0.05376, 0.10344),
CTX = c(0.00000, 0.02396, 0.05172),
TOB = c(0.02325, 0.02597, 0.10344),
TMP = c(0.08387, 0.39141, 0.18367)
),
class = c("grouped_df", "tbl_df", "tbl", "data.frame"),
row.names = c(NA, -3L),
groups = structure(list(
order = c("Bacillales", "Enterobacterales"),
.rows = list(1L, 2:3)
),
row.names = c(NA, -2L),
class = c("tbl_df", "tbl", "data.frame"),
.drop = TRUE
)
resistance_data <- structure(
list(
order = c("Bacillales", "Enterobacterales", "Enterobacterales"),
genus = c("Staphylococcus", "Escherichia", "Klebsiella"),
AMC = c(0.00425, 0.13062, 0.10344),
CXM = c(0.00425, 0.05376, 0.10344),
CTX = c(0.00000, 0.02396, 0.05172),
TOB = c(0.02325, 0.02597, 0.10344),
TMP = c(0.08387, 0.39141, 0.18367)
),
class = c("grouped_df", "tbl_df", "tbl", "data.frame"),
row.names = c(NA, -3L),
groups = structure(
list(
order = c("Bacillales", "Enterobacterales"),
.rows = list(1L, 2:3)
),
row.names = c(NA, -2L),
class = c("tbl_df", "tbl", "data.frame"),
.drop = TRUE
)
)
pca_model <- pca(resistance_data)
expect_inherits(pca_model, "pca")