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new SDD and N for as.sir()

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dr. M.S. (Matthijs) Berends
2024-05-20 15:27:04 +02:00
parent b68f47d985
commit 08a27922a8
28 changed files with 225 additions and 172 deletions
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4
R/custom_eucast_rules.R
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@@ -181,8 +181,8 @@ custom_eucast_rules <- function(...) {
result_value <- as.character(result)[[3]]
result_value[result_value == "NA"] <- NA
stop_ifnot(
result_value %in% c("S", "I", "R", NA),
"the resulting value of rule ", i, " must be either \"S\", \"I\", \"R\" or NA"
result_value %in% c("S", "SDD", "I", "R", "N", NA),
"the resulting value of rule ", i, " must be either \"S\", \"SDD\", \"I\", \"R\", \"N\" or NA"
)
result_value <- as.sir(result_value)