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new SDD and N for as.sir()

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dr. M.S. (Matthijs) Berends
2024-05-20 15:27:04 +02:00
parent b68f47d985
commit 08a27922a8
28 changed files with 225 additions and 172 deletions
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2
R/first_isolate.R
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@ -236,7 +236,7 @@ first_isolate <- function(x = NULL,
FUN.VALUE = logical(1),
X = x,
# check only first 10,000 rows
FUN = function(x) any(as.character(x[1:10000]) %in% c("S", "I", "R"), na.rm = TRUE),
FUN = function(x) any(as.character(x[1:10000]) %in% c("S", "SDD", "I", "R", "N"), na.rm = TRUE),
USE.NAMES = FALSE
))
if (method == "phenotype-based" && !any_col_contains_sir) {