From 09881c5781ce8bf907b92b370646c9a195a9c932 Mon Sep 17 00:00:00 2001 From: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Date: Sun, 3 Dec 2023 10:41:04 +0000 Subject: [PATCH] Built site for AMR: 2.1.1.9002@c746176 --- 404.html | 2 +- LICENSE-text.html | 2 +- articles/AMR.html | 2 +- articles/EUCAST.html | 2 +- articles/MDR.html | 58 +++--- articles/PCA.html | 2 +- articles/WHONET.html | 2 +- articles/datasets.html | 2 +- articles/index.html | 2 +- articles/other_pkg.html | 2 +- articles/resistance_predict.html | 2 +- articles/welcome_to_AMR.html | 2 +- authors.html | 2 +- index.html | 2 +- news/index.html | 14 +- pkgdown.yml | 2 +- reference/AMR-deprecated.html | 223 ---------------------- reference/AMR-options.html | 2 +- reference/AMR.html | 2 +- reference/Rplot005.png | Bin 13647 -> 13425 bytes reference/Rplot006.png | Bin 13317 -> 13094 bytes reference/Rplot007.png | Bin 12961 -> 8840 bytes reference/Rplot008.png | Bin 21154 -> 8151 bytes reference/Rplot009.png | Bin 8453 -> 9553 bytes reference/Rplot010.png | Bin 8840 -> 8467 bytes reference/Rplot011.png | Bin 9362 -> 12989 bytes reference/Rplot012.png | Bin 10271 -> 20243 bytes reference/Rplot013.png | Bin 9577 -> 8534 bytes reference/WHOCC.html | 2 +- reference/WHONET.html | 2 +- reference/ab_from_text.html | 2 +- reference/ab_property.html | 2 +- reference/add_custom_antimicrobials.html | 2 +- reference/add_custom_microorganisms.html | 2 +- reference/age.html | 22 +-- reference/age_groups.html | 2 +- reference/antibiogram.html | 2 +- reference/antibiotic_class_selectors.html | 10 +- reference/antibiotics.html | 2 +- reference/as.ab.html | 2 +- reference/as.av.html | 2 +- reference/as.disk.html | 2 +- reference/as.mic.html | 16 +- reference/as.mo.html | 2 +- reference/as.sir.html | 28 +-- reference/atc_online.html | 2 +- reference/av_from_text.html | 2 +- reference/av_property.html | 2 +- reference/availability.html | 2 +- reference/bug_drug_combinations.html | 2 +- reference/clinical_breakpoints.html | 2 +- reference/count.html | 2 +- reference/custom_eucast_rules.html | 2 +- reference/dosage.html | 2 +- reference/eucast_rules.html | 2 +- reference/example_isolates.html | 2 +- reference/example_isolates_unclean.html | 2 +- reference/first_isolate.html | 2 +- reference/g.test.html | 2 +- reference/get_episode.html | 120 ++++++------ reference/ggplot_pca-1.png | Bin 47751 -> 48123 bytes reference/ggplot_pca-2.png | Bin 89714 -> 90569 bytes reference/ggplot_pca.html | 12 +- reference/ggplot_sir.html | 2 +- reference/guess_ab_col.html | 2 +- reference/index.html | 65 +++---- reference/intrinsic_resistant.html | 2 +- reference/italicise_taxonomy.html | 2 +- reference/join.html | 2 +- reference/key_antimicrobials.html | 2 +- reference/kurtosis.html | 6 +- reference/like.html | 2 +- reference/mdro.html | 2 +- reference/mean_amr_distance.html | 73 ++++--- reference/microorganisms.codes.html | 2 +- reference/microorganisms.groups.html | 2 +- reference/microorganisms.html | 2 +- reference/mo_matching_score.html | 2 +- reference/mo_property.html | 2 +- reference/mo_source.html | 2 +- reference/pca.html | 2 +- reference/plot-1.png | Bin 26277 -> 26875 bytes reference/plot-10.png | Bin 26057 -> 25381 bytes reference/plot-11.png | Bin 27081 -> 35507 bytes reference/plot-12.png | Bin 30546 -> 60264 bytes reference/plot-13.png | Bin 27660 -> 26123 bytes reference/plot-2.png | Bin 27072 -> 26396 bytes reference/plot-3.png | Bin 28311 -> 27742 bytes reference/plot-4.png | Bin 40292 -> 40843 bytes reference/plot-5.png | Bin 40830 -> 40160 bytes reference/plot-6.png | Bin 39181 -> 38474 bytes reference/plot-7.png | Bin 37596 -> 26057 bytes reference/plot-8.png | Bin 62144 -> 25035 bytes reference/plot-9.png | Bin 26091 -> 28236 bytes reference/plot.html | 91 ++++----- reference/proportion.html | 2 +- reference/random.html | 34 ++-- reference/resistance_predict.html | 2 +- reference/skewness.html | 4 +- reference/translate.html | 2 +- search.json | 2 +- sitemap.xml | 3 - 102 files changed, 340 insertions(+), 563 deletions(-) delete mode 100644 reference/AMR-deprecated.html diff --git a/404.html b/404.html index ff67f8a7..1f2050ec 100644 --- a/404.html +++ b/404.html @@ -36,7 +36,7 @@ AMR (for R) - 2.1.1.9001 + 2.1.1.9002 - - - - - -
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These functions are so-called 'Deprecated'. They will be removed in a future release. Using the functions will give a warning with the name of the function it has been replaced by (if there is one).

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Usage

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NA_rsi_
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-as.rsi(x, ...)
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-facet_rsi(...)
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-geom_rsi(...)
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-ggplot_rsi(...)
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-ggplot_rsi_predict(...)
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-is.rsi(...)
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-is.rsi.eligible(...)
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-labels_rsi_count(...)
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-n_rsi(...)
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-random_rsi(...)
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-rsi_df(...)
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Format

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An object of class rsi (inherits from ordered, factor) of length 1.

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